Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31065
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   1.9  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    24   7.8  
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    24   7.8  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 287 EARRPGTARNTRRPXPTELSVCCRERSETPRHRN 186
           EA  PG  RNTR+    ++S+    ++ET   +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 213 LPAANAQLCRXRTPSVSRCAW 275
           LPA  +Q+C       S CAW
Sbjct: 137 LPADKSQICTDIIDDASGCAW 157


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 93  NIVILGET*LSLENNLGEKLRRKP 22
           N+V+LGE  L  E +  ++LRR P
Sbjct: 76  NVVLLGELDLDKEYDAVKQLRRMP 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,075,231
Number of Sequences: 5004
Number of extensions: 15555
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)