Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31065
(347 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.19
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 29 1.0
12_02_1275 - 27482784-27483272 28 1.8
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 28 2.3
01_05_0563 - 23309557-23309979 28 2.3
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 27 3.1
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 27 3.1
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 27 3.1
05_06_0130 + 25887081-25887349,25887445-25887697 27 4.0
03_05_0057 + 20350971-20351405 27 4.0
07_03_1294 + 25574023-25574171,25574797-25574911 27 5.3
03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270 27 5.3
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93... 27 5.3
01_01_0488 - 3597652-3598761,3599619-3600860 27 5.3
06_03_0786 - 24579722-24580137,24580518-24580590 26 7.1
08_02_0833 - 21623721-21623821,21624076-21624667 26 9.3
07_03_0255 + 15866422-15866434,15867907-15868659,15868728-15868909 26 9.3
02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642... 26 9.3
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.19
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 139 WKWCGLRRDQTGREG 183
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 234 AERLLPGALRDAPSPE*XFSTCLVSTESTPF 142
++RL+ ALR PSP F++ L +TPF
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 136 QWKWCGLRRDQTGREG 183
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 113 SSSISKYYNGNGVDSVETKQVEKXYSGDGASLSAPGSKRSALSXSDAECFSLCLG 277
SSS S+Y N +G +T ++ SG +S S +S D E L LG
Sbjct: 781 SSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLLLG 835
>01_05_0563 - 23309557-23309979
Length = 140
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +2
Query: 188 SGDGASLSAPGSKRSALSXSDAECFSLCLGAGPLWWX*CPCSRXCTAGXV 337
+G +A GS S + CF C+ W+ C R C AG +
Sbjct: 30 AGGDELAAAVGSSSSIMPPCFHACFDQCVQREEYWFCQFSCYRRCGAGAI 79
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 136 QWKWCGLRRDQTGREG 183
+W W GLRR +TGR G
Sbjct: 558 RWVWRGLRRIKTGRRG 573
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 26 LRRNFSPKLFSRLNYVSPRMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEK 181
L RN +L RL ++ ++ + NCSS Y+G VD +T ++K
Sbjct: 984 LMRNKVCELGVRLKFLEEAISGSVDPNNCSSKEKLLYDGIEVDMHDTAALQK 1035
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 27.5 bits (58), Expect = 3.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 136 QWKWCGLRRDQTGREG 183
+W+W GLRR + GR G
Sbjct: 64 RWEWHGLRRTKAGRRG 79
>05_06_0130 + 25887081-25887349,25887445-25887697
Length = 173
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 32 RNFSPKLFSRLNYVSPR-MTMLIQQLNCSSSISKYYNG 142
R F+P+ RLN S M+ + +QL +S+YY G
Sbjct: 62 RRFAPQPLRRLNSDSIYDMSSMTEQLPAKKGLSRYYEG 99
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 206 LSAPGSKRSALSXSDAECFSLCLGAGP 286
LS+P + R AL D EC S AGP
Sbjct: 74 LSSPKAAREALKVHDPECCSRSPSAGP 100
>07_03_1294 + 25574023-25574171,25574797-25574911
Length = 87
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 29 RRNFSPKLFSRLNYVSPRMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKXY 187
+R SP L ++ PRMTML + + GNG Q+ Y
Sbjct: 33 QRKCSPSLAPNIDRTGPRMTMLSLKPYKEICTMPIHGGNGWKEATLVQISSFY 85
>03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270
Length = 121
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 136 QWKWCGLRRDQTGREG 183
+W W GLRR + GR G
Sbjct: 49 RWMWRGLRRTKAGRRG 64
>02_01_0129 -
934865-935152,935241-935490,935965-936105,937175-937707
Length = 403
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 225 NAQLC-RXRTPSVSRCAWAPGLCGG 296
NA C R P V+ +WAP CGG
Sbjct: 75 NAWNCPRNSRPPVAALSWAPARCGG 99
>01_01_0488 - 3597652-3598761,3599619-3600860
Length = 783
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 71 VSPRMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKXYSGDGASLSAPG 220
V+PR++ +Q+ ++ K N NGV V+ ++ + Y G + L A G
Sbjct: 356 VAPRLSPGLQRTMEDLAVDKIVN-NGVGLVDPRRARELYEGLHSHLQASG 404
>06_03_0786 - 24579722-24580137,24580518-24580590
Length = 162
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 136 QWKWCGLRRDQTGREGL 186
+W W GLRR + GR G+
Sbjct: 144 RWMWRGLRRMKDGRRGM 160
>08_02_0833 - 21623721-21623821,21624076-21624667
Length = 230
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 139 WK-WCGLRRDQTGREGLFR*RGVSERSRQQTLSSVGFGRR 255
WK WC RR+ +R GV R R++ S V +GR+
Sbjct: 90 WKAWC--RRESRRWPSSWRGEGVRWRMRRERRSGVSWGRK 127
>07_03_0255 + 15866422-15866434,15867907-15868659,15868728-15868909
Length = 315
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 104 LNCSSSISKYYNGNGVDSVETKQVEKXYSGDGASLSAPGSK 226
LN +I KY N V S K E+ AS +AP K
Sbjct: 40 LNSVRNIRKYVNDRSVGSKMMKSTERDSMSSSASETAPKLK 80
>02_02_0654 - 12662931-12663200,12663296-12663550,12664097-12664268,
12664354-12664581,12664727-12664860,12665018-12665101,
12665332-12665538,12665641-12665973,12666175-12666281,
12666439-12666593,12666778-12666810,12666924-12666972,
12667152-12667312,12667413-12668313,12668391-12668481,
12668558-12668749
Length = 1123
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 131 YYNGNGVDSVETKQVEKXYSGDGASLSAPGSKRSALS 241
YY N V + + G+G S+S PG A+S
Sbjct: 1043 YYWANPVSWTIYGVIASQFGGNGGSISVPGGSHVAMS 1079
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,116,414
Number of Sequences: 37544
Number of extensions: 135262
Number of successful extensions: 346
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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