Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31064
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.6  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    26   6.4  

>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 489 EKLEKSYLKYLFKANIGNIVL*MFKHLFYIVSRFGQLVIGKRT 361
           EK E S+LK LF  N+G  +      L  I+  +  LVI  +T
Sbjct: 39  EKYETSFLKSLFNGNLGLSLPSAINILTLIIVLYFSLVIVNKT 81


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 728 YIYSYACSKKVVIPI----LQTDSQY*MYRIVILNKSLQRFVT 612
           ++ SY     +VIP     L  DS++ +Y +V+  K+   F+T
Sbjct: 202 FLNSYETLTDLVIPRSAKKLDQDSEFVLYTVVVFKKTADSFIT 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,999
Number of Sequences: 5004
Number of extensions: 60634
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)