Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31063
(432 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 58 6e-10
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 45 4e-06
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 36 0.003
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 31 0.100
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 30 0.13
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 27 0.93
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 1.6
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 26 2.2
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 26 2.8
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 25 3.8
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 3.8
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 5.0
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 6.6
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 6.6
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 24 8.7
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 24 8.7
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 58.0 bits (134), Expect = 6e-10
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +1
Query: 193 SITNAYKK-PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLW 369
+I + Y + PV+ +G +L+D +G++Y+D G+ S+GH HP+V DQ L
Sbjct: 46 NIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKLV 105
Query: 370 HTTNL-YRHPKI 402
H++NL Y P I
Sbjct: 106 HSSNLFYNEPAI 117
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 45.2 bits (102), Expect = 4e-06
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +1
Query: 148 SYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHP 327
S +Q+E ++ Y + N + PV ++ ++D +G+ YLD V+ GHCHP
Sbjct: 12 STEQIEVLENEY---AAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHP 68
Query: 328 KVNAALKDQ 354
K+ AL +Q
Sbjct: 69 KIIEALVEQ 77
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 35.9 bits (79), Expect = 0.003
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +1
Query: 217 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHP 396
P ++ + +YD LD G ++ +GH HP + A ++ L L H + + P
Sbjct: 33 PKIIVRAKGCCVYDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKLVHLFSGFLSP 92
Query: 397 KIYEYVEQLA 426
+ + +L+
Sbjct: 93 PVVQLATELS 102
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 30.7 bits (66), Expect = 0.100
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 217 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLD 360
P+ + G+ L D DG Y D + GH +P + AL D
Sbjct: 52 PIFIEAGYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFD 99
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 30.3 bits (65), Expect = 0.13
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 199 TNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQ 354
T+ +P + + +LY DG R +D GG +GH + +V A+ Q
Sbjct: 22 TSPNHRPPTVVRAEGVYLYLEDGTRIMDATGGAAVACLGHGNKEVIDAMHKQ 73
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 27.5 bits (58), Expect = 0.93
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 43 EMANRGT--KLCFDIVRTYSTAKMPPTDF 123
E+ANR KLC+ I++ A +PPT+F
Sbjct: 355 EIANRPRDFKLCYWILKEIGVATIPPTEF 383
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 139 TGPSYQQVEQMKGVYMPPSITNAYKKPVLL 228
+G SY+ V+ + VY+ PS + A KKP ++
Sbjct: 977 SGDSYRTVKSNQTVYIHPSSSVAEKKPKVI 1006
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 2.2
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = -2
Query: 335 FTFG*QWPTETVTIPPNRSRYLLPSLSYNHCMCP 234
+T+ +W E + P Y++ YN +CP
Sbjct: 108 YTYNSRWKIEIPSYPVREIPYVVADTPYNKLLCP 141
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 256 DNDGKRYLDLFGGIVTVSVGH 318
D G +LDL GG+ V+VG+
Sbjct: 85 DEKGTEHLDLIGGVGVVTVGN 105
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 3.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 152 YEGPVYGLGTKSVGGILAVLYVLTMSKHNFVPLLAISMCFSVEAIAIC 9
+E P+ L K V + +L L ++ PL+ I+ EA+A C
Sbjct: 246 FENPLILLSEKKVSAVQDILPSLELAAQQRRPLVIIAEDVDGEALAAC 293
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 206 PIRSRCFSPRGTCSGYTTTT 265
P R+ C+SP G Y T T
Sbjct: 36 PARNACYSPNGKLFAYATAT 55
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 5.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 118 DFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 219
D P P PS Q + MPP +T Y +P
Sbjct: 454 DGSPDPPAAPSIQNSLSVHESEMPPHVTRDYTQP 487
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 339 CIYFRMTMAHGDGDDSTEQIQ 277
C+YF T+ + +GDD IQ
Sbjct: 48 CVYFYHTLENQEGDDERPLIQ 68
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 6.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -3
Query: 163 LLVGTKVPCTVWARNPSAAFWPC 95
+ VGT +WA P ++ W C
Sbjct: 511 ITVGTDATLRIWALLPGSSAWKC 533
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 269 LPSLSYNHCMCPWVRSTGF 213
LPS S N+C W R GF
Sbjct: 230 LPSSSQNNCKANWKRWFGF 248
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 24.2 bits (50), Expect = 8.7
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 299 TIPPNRSRYLLP-SLSYNHCMCPWVRSTGFL*AFVIEGGM*TPFICSTCWYEGPVYGLGT 123
+IP S YL+ ++S W G+ ++ G+ + S W GP+ G+
Sbjct: 27 SIPSRSSLYLIALTVSLLGVQLTWSVELGYGTPYLFSLGLRKEWT-SIIWIAGPLTGILI 85
Query: 122 KSVGGILA 99
+ + GIL+
Sbjct: 86 QPIAGILS 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,716
Number of Sequences: 5004
Number of extensions: 41711
Number of successful extensions: 129
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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