Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31062
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    76   4e-15
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    31   0.20 
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.5  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   2.5  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    26   5.8  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    26   5.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.8  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
 Frame = +1

Query: 232 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTV 411
           SN+LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQA+  L EP  
Sbjct: 73  SNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVG 132

Query: 412 TIRVRQTDKALVESLLGKAQTDYKNKIKK-DVVLKVDTENFLSPDTCGGIELVAARGRIK 588
            +  RQ D  +V++ + KA    K+K    D  L  +T++FL+    GG+ LV   G+I+
Sbjct: 133 IVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGVVLVGLGGKIR 192

Query: 589 ISNTLGVSL 615
           + NTL   L
Sbjct: 193 VDNTLRARL 201



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 608 SRLELIAQQLLPEIRNALFRTQP 676
           +RLE++ ++ LPEIR  LF   P
Sbjct: 199 ARLEIVKEEALPEIRRLLFGENP 221


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 550 HRCRATKSS-RCRLSTQHPS*SYSCSLFGLFRAGTPPEPCR 431
           H  R  +SS + RLS +H   S++C +      G P  PCR
Sbjct: 77  HTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 280 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 405
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
 Frame = +1

Query: 298  LDEARKRLAEVPKDTK-LYSELLVTLIVQALFQL---MEPTVTIRVR-----QTDKALVE 450
            ++EA K      KD K L   +L T+ +     +   +E T+TI V        DK   E
Sbjct: 745  VEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEE 804

Query: 451  SLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTC 549
            + LGK   D  N  + DV+  V  E   + D C
Sbjct: 805  NDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 576 PGC-NQLDSTTGVGRQKVLGVDFQHNILLDLILVVCLGF 463
           PG  N LDS  G  R+K       H + + ++L++C G+
Sbjct: 22  PGTSNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLCSGY 60


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 660 RALRISGSSCWAISSKRDSQSVADLDTSPGCNQLDSTTGVGRQKVLGVD 514
           RA R+    C+ + ++R   +  D+ TSP   + + T  V   K LG++
Sbjct: 744 RAGRVGPGKCFRLYTRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGIN 792


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 483 LVVCLGFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCDQQL*VQFGV 337
           L+V     EQG    ++   D+  +SG HE+ + L N  DQQL  Q  +
Sbjct: 492 LIVACEELEQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,725
Number of Sequences: 5004
Number of extensions: 51357
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)