Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31062
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 71 6e-13
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 65 6e-11
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 64 1e-10
09_02_0115 + 4413714-4414475 32 0.49
03_04_0095 + 17266595-17266741,17267235-17267807 29 2.6
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 3.4
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 4.5
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520... 28 6.0
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 6.0
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 7.9
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 71.3 bits (167), Expect = 6e-13
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 11/139 (7%)
Frame = +1
Query: 232 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTV 411
S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ L +L EP V
Sbjct: 71 SMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAV 130
Query: 412 TIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTENFLSPDT---------C-GGI 558
+R R+ D VES+L A+ +Y +K + + VD + +L P C GG+
Sbjct: 131 LLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPPSPSSHDSHERFCSGGV 190
Query: 559 ELVAARGRIKISNTLGVSL 615
L + G+I NTL L
Sbjct: 191 VLASRDGKIVCENTLDARL 209
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 64.9 bits (151), Expect = 6e-11
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 21/149 (14%)
Frame = +1
Query: 232 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ---------- 381
S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 72 SKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQDKLTKKNPEQ 131
Query: 382 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNK---------IKKDVVLKVDTENFL 534
+L +L EP V +R R+ D+ LVES+L A+ +Y +K + ++V L ++
Sbjct: 132 SLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPPAPSHYE 191
Query: 535 S--PDTCGGIELVAARGRIKISNTLGVSL 615
+ P GG+ L + G+I NTL L
Sbjct: 192 AHGPSCSGGVVLASRDGKIVCENTLDARL 220
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 64.1 bits (149), Expect = 1e-10
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 22/146 (15%)
Frame = +1
Query: 232 SNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV----------- 378
S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 71 STQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQRKDSEIIDQI 130
Query: 379 QALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTENFLSPDT--- 546
Q+L +L EP+V +R R+ D+ VES+L A+ +Y K K ++ + +D + +L P
Sbjct: 131 QSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGKVYLPPPKTAR 190
Query: 547 ------C-GGIELVAARGRIKISNTL 603
C GG+ + + G+I NTL
Sbjct: 191 DAHGPFCSGGVVIASQDGKIVCDNTL 216
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 351 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 449
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>03_04_0095 + 17266595-17266741,17267235-17267807
Length = 239
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Frame = +3
Query: 375 CAGSLPAHGTHCHHPRPSNRQGSGGVPARKSPNRLQE*DQEGCCVE-----SRHRELFVA 539
C G + HG H R ++ GV P + + + C + R RE
Sbjct: 150 CVG-VRLHGRRHPHRREAHGGSGSGVFIGGGPREVAQGETSSCARQHLLDGQRRRE--PK 206
Query: 540 RHLWWNRAG 566
RHLWW R G
Sbjct: 207 RHLWWQRGG 215
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 250 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 384
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 369 TYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSP 470
T + P H CH RP R G VP SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164
>11_06_0042 +
19550260-19550278,19550418-19550530,19551841-19552051,
19552164-19552401,19552662-19552752,19552883-19552917,
19554179-19554452
Length = 326
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 390 PAHGTHCHHPRPSNRQGSGGVPARKSPNRL 479
P+ C HP + R SGG A S NR+
Sbjct: 289 PSRPAFCMHPADATRTASGGETAAASANRV 318
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 369 TYCAGSLPAHGTHCHHPRPSNRQGSGG 449
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 529 FLSPDTCGGIELVAARGRIKISNTLGVSLGADRPAAAAG 645
FL P TC IE+ A I ++ L A RPA+AAG
Sbjct: 21 FLLP-TCWEIEVTCAAAMILVALYAAYELLAPRPASAAG 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,870,350
Number of Sequences: 37544
Number of extensions: 398813
Number of successful extensions: 1234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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