Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31062
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...   104   5e-23
Z75546-1|CAA99889.1|  546|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score =  104 bits (250), Expect = 5e-23
 Identities = 53/126 (42%), Positives = 76/126 (60%)
 Frame = +1

Query: 226 QSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 405
           Q+SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q L QL+E 
Sbjct: 71  QASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQGLLQLLEK 130

Query: 406 TVTIRVRQTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTCGGIELVAARGRI 585
            V +R R+ D  LVE LL +     + +      + +D +NFL  ++ GG+EL A  G+I
Sbjct: 131 EVVLRCREKDLRLVEQLLPECLDGLQKEWGSTTKVVLDKQNFLPSESAGGVELSARAGKI 190

Query: 586 KISNTL 603
           K+S+TL
Sbjct: 191 KVSSTL 196



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +2

Query: 575 GDVSRSATLWESRLELIAQQLLPEIRNALFRTQP 676
           G +  S+TL ESRLELIA Q++P++R ALF   P
Sbjct: 188 GKIKVSSTL-ESRLELIANQIVPQVRTALFGPNP 220



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = +2

Query: 131 KGRLVQQQRLKIMGIL*KARXKQV 202
           KGRLVQQQR KIM    K + KQV
Sbjct: 42  KGRLVQQQRQKIMEFFEK-KEKQV 64


>Z75546-1|CAA99889.1|  546|Caenorhabditis elegans Hypothetical
           protein R05D11.1 protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 521 PRTFCRPTPVVESSWLQPGDVSRSATLWE 607
           P T   P P+  SS L+ GD+SR A ++E
Sbjct: 311 PITPIEPRPLYRSSALELGDLSRQAGIYE 339


>Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical
           protein F54F7.4 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 581 RPLAATSSIPPQVSGDKKFSVSTFNTTSFLILFL*SVWAF 462
           RP++  S   P  + D+ F ++TF T   +I+FL  ++ F
Sbjct: 101 RPVSVNSRRKPSSTLDELFDLNTFFTCYVIIIFLSLIFLF 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,466
Number of Sequences: 27780
Number of extensions: 302270
Number of successful extensions: 872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)