Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31062
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   0.66 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.88 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   6.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.2  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 325 EVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV 504
           E+ K  K   E ++ +I +A    +EPT    +RQT +  V  +L  A+       KK +
Sbjct: 162 EIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSL 221


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 7/27 (25%), Positives = 20/27 (74%)
 Frame = +1

Query: 442 LVESLLGKAQTDYKNKIKKDVVLKVDT 522
           +V+++ G     +KN++++++ +K+DT
Sbjct: 58  IVKAISGVQTVRFKNELERNITIKLDT 84


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 489 LILVVCLGFSEQGL 448
           L+LVVCLG + QG+
Sbjct: 5   LLLVVCLGIACQGI 18


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 118 NSPSALTHRIXSGPFPLAXLVTNEGHPCAMIC 23
           +S S +   + S    L  L+ +  HPC M C
Sbjct: 316 SSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 347


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 118 NSPSALTHRIXSGPFPLAXLVTNEGHPCAMIC 23
           +S S +   + S    L  L+ +  HPC M C
Sbjct: 231 SSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 262


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 118 NSPSALTHRIXSGPFPLAXLVTNEGHPCAMIC 23
           +S S +   + S    L  L+ +  HPC M C
Sbjct: 550 SSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 581


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 615 KRDSQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLILVVC 472
           ++DS    D D   G     +  G+    V+GV     +LL L+ V+C
Sbjct: 79  EKDSIHSIDGDEENGLTSESTDPGLVAGIVIGVTSLGLLLLALVAVLC 126


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 576 PGCNQLDSTTGVGRQKVL-GVDFQHNIL 496
           PG  Q+DS+T  GR+     ++F  N L
Sbjct: 530 PGKIQMDSSTNFGREDFWNSINFNENKL 557


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 576 PGCNQLDSTTGVGRQKVL-GVDFQHNIL 496
           PG  Q+DS+T  GR+     ++F  N L
Sbjct: 530 PGKIQMDSSTNFGREDFWNSINFNENKL 557


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 223 SQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 381
           S S +  NQ R       +DH     +  RK+L +  +  +L  +L + +I Q
Sbjct: 110 SSSEHASNQERFGYFSSLKDHQHQFAELGRKKLEQAIQ--QLQEQLQLNVIQQ 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,515
Number of Sequences: 438
Number of extensions: 3346
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)