Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31060
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 73 5e-14
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 28 1.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 2.4
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 27 3.2
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 26 4.2
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 26 5.6
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.7
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 9.7
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 25 9.7
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 72.5 bits (170), Expect = 5e-14
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 1/171 (0%)
Frame = +2
Query: 86 PHIMLTLESKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSSKF 262
P + ND+ + + G L ++T + +GV F ++ NQ++ G + G L + F
Sbjct: 3 PPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLETSF 60
Query: 263 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDT 442
K GLT ++ W T N L + + + ++ A GL + + TF+P T KT L +
Sbjct: 61 NDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQHPL 120
Query: 443 VAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALSY 595
+ + +++ + D + ++G+LAG +D QK S + Y
Sbjct: 121 IHTHASVNALERKFLGDF--TVGHEGFLAGAEFGYDVQKGNVSNYAATIGY 169
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
Frame = +2
Query: 167 LKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 346
L ++ + SG + + V + + + G ++DN I +
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232
Query: 347 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV--NTNLDLDLAGPVVDV 496
A L G PQ T F+ ++ T+LD +L PV D+
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 365 VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 469
V++E P+ T +G+++T+F DT+ + L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 68 KTQTWLPHIMLTLESKA 118
KT +WLP++ L LESK+
Sbjct: 1154 KTPSWLPNLTLNLESKS 1170
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 564 FAFCVSNWVCTPASQPW*FSTAATSTTG 481
F F S+W P +PW FST A G
Sbjct: 1677 FNFAKSHW--EPVIEPWTFSTTAIMKDG 1702
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 176 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 325
+S SG S + S + V +L S +K + LTF +W + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 223 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG 116
L GG G+F++ L G++ ++ T+ AE +IG
Sbjct: 72 LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +3
Query: 174 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 266
P L + P + P T+KA +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 314 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 412
T+A D++ ++ A VTLEGT +TG TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 200 TSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 325
T+G + +G V G LS + + F EK++ + LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.0 bits (52), Expect = 9.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 163 EFENTKVIALAEDIIGLAFQGQHNMGEPCLCFINSQ-IGIISQRIPRKLARATI 5
E +N IA A +I+G AF+ N E L + + + ++R + LARA I
Sbjct: 587 ERKNVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERARKLLARARI 640
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,957
Number of Sequences: 5004
Number of extensions: 50540
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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