Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31054
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.48 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.83 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 438 KKESNDLLDAHVVLVHGRAWQSAALVVGFGL 346
           K+  NDLLD + VL      +S  LV+ FGL
Sbjct: 25  KRLLNDLLDTYNVLERPVGNESEPLVLSFGL 55


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 543 HEDGSEYFTRSLLSDFSSRLGGLQLCRHIH 454
           +++ SE F + L  +  S+ GG+ L  H H
Sbjct: 483 NKEDSEEFRQRLRKELDSKTGGVNLKGHAH 512


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 561 VRRTTIHEDGSEYFTRSLLSDFSSRLGGLQL 469
           ++R +IH   +  F    + DF+ R+  L+L
Sbjct: 302 LKRESIHNSSNARFLMDSMFDFAERVNSLRL 332


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 79  SFIVKYVNITVTNPMMEKR 135
           SF+ +YV   +TN   EKR
Sbjct: 520 SFVTQYVGEVITNEEAEKR 538


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 234 ISSGSDIDVLIKFSTVDTFRTCRRSDRLRR 145
           +SS   +D + +  T+DT  T  R DR+ R
Sbjct: 462 MSSMDRMDRMDRVDTMDTMDTMDRMDRMDR 491


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,196
Number of Sequences: 438
Number of extensions: 4545
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)