Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31051
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 178 5e-46
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 26 3.1
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 4.1
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 26 4.1
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 25 5.4
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom... 25 7.2
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 7.2
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 25 9.5
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 9.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 9.5
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 178 bits (433), Expect = 5e-46
Identities = 90/170 (52%), Positives = 110/170 (64%)
Frame = +1
Query: 31 LYTIITFPFLFAVMFGDLGHGCIMAMFGGWMVVKEVSLAAKKSNNEIWNIFFAGRYIILL 210
+ I+TFPFLFA+MFGDLGHG IMA V+ E +L AKK +EI + F GRYI+LL
Sbjct: 397 IVAIVTFPFLFAIMFGDLGHGAIMASVALMFVLYEKTLGAKKDLDEIVGMVFYGRYIVLL 456
Query: 211 MGCFSMYTGLVYNDIFSKSLNIFGSSWHIPYDNHTLAENGALTLDPKDAYTEVPYFIGID 390
MG FSMY G VYND+FSK ++IF S W P + A Y IGID
Sbjct: 457 MGLFSMYVGFVYNDLFSKPMSIFSSRWVWPVKSEEAIAR---------AVQVGTYPIGID 507
Query: 391 PIWQSADNKIIFLNSYKMKLSIIFGVIHMIFGVCMSVVNYNFFKRRYSIF 540
P W SADN ++F+NSYKMKLSII GVIHM F + +S+ NY FFKR+ I+
Sbjct: 508 PTWHSADNNLLFMNSYKMKLSIILGVIHMTFCLFLSLSNYRFFKRKLDIY 557
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 418 IIFLNSYKMKLSIIFGVIHMIFGVCMSVVNYNF 516
+ LN Y M + F I +I+ +C +V+ YN+
Sbjct: 30 VTHLNDYLM-FYLTFIFIGVIYAICKAVIEYNY 61
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 486 TEYHVDYTEYDRQLHFVR 433
T +H YT YD QL F+R
Sbjct: 11 TNFHHPYTPYDIQLEFMR 28
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +1
Query: 151 KKSNNEIWNIFFAGRYIILLMGCFSMYTGLVYNDIFSKSLNIF 279
+++ +++W A + G + L+YNDI S + +F
Sbjct: 278 ERTGSDVWAFLLAHDIMFAYRGNILVIKQLIYNDISSTKVRLF 320
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 349 KDAYTEVPYFIGID-PIWQSADNKIIFLNSYKMKLSIIFGVIHMIFGVCMSVVNYNFFKR 525
+D+ + + +GID W ++ + L+ ++ + ++FGVCM ++ +F K+
Sbjct: 261 EDSISFISVIMGIDLGTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMILIWKSFAKQ 320
>SPAC1527.02 |sft2||Golgi transport protein Sft2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 448 LSIIFGVIHMIFGVCMSVVNYNFFKRRYSI 537
LSI+FGV+H++ V + + F R S+
Sbjct: 158 LSIVFGVLHILSFVAYLIAFFPFGTRTVSL 187
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 540 EDGVATLEEIVVDHAHADTEYHVDY 466
E+ A +E+++ H +AD+ +VDY
Sbjct: 675 EEKEAIMEKLIYSHQYADSLSYVDY 699
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -1
Query: 279 KYVQRLGEDIVVHEAGVHREAAHEQDYVAAREEYIPDFVVRF 154
KY +R G V G+ R AHE + +YI + + ++
Sbjct: 108 KYAERHGYHFFVKSTGLKRRYAHEWRESWEKADYIMEAMKKY 149
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -1
Query: 540 EDGVATLEEIVVDHAHADTEYHV 472
+D ++ ++++ +DHAH D + V
Sbjct: 1586 KDSLSAVKKLALDHAHCDYNFSV 1608
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -1
Query: 504 DHAHADTEYHVDYTEYDRQLHFVRVEEDNLVVSALPNRVDTDEVWHFGVGVFRVERQGAV 325
DH++ H D + Y ++L VR + N S+L ++T E F V + + A
Sbjct: 35 DHSNHIKVSHFDPSSYKQKLVSVRETQRNRKFSSLQKHLNT-ETPSFSVSIENPSKPSAA 93
Query: 324 LSE 316
++
Sbjct: 94 FND 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,860
Number of Sequences: 5004
Number of extensions: 44619
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -