Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31048
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   4.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.7  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 246 YYSSLPSHIKVNLPALSPTMES 311
           + + LP H+  N+P +  T+ S
Sbjct: 6   HVAQLPHHLSPNMPTMDSTVSS 27


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 555  TPQKPAS--QDKAACRTRPRCASTRSPRP 635
            TP +PA+  Q +A  + +P+      P+P
Sbjct: 998  TPPQPANAQQGQAQAQAKPQSQEANKPKP 1026


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 496 LEIRMMLRHSKISKMTHHLQHLK 564
           LEI++     +++ M HHL   K
Sbjct: 326 LEIQLQKERDRLTAMMHHLHVAK 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,061
Number of Sequences: 438
Number of extensions: 4860
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)