Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31046
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0373 + 2897874-2898911                                           31   1.3  
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089...    29   2.9  
10_01_0154 - 1764554-1764727,1764829-1764927,1765710-1766172,176...    29   3.9  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    29   5.2  
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           28   6.8  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    28   6.8  
02_05_0201 + 26687369-26689228                                         28   6.8  
05_01_0120 - 828834-831143                                             28   9.0  

>12_01_0373 + 2897874-2898911
          Length = 345

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +1

Query: 436 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTTTAGAA 612
           L+ ++A  P   S  + TTT  AAT     T  S+  TS T     +  TS T  A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTSTT----SNGATSVTAAATAA 308


>02_05_0886 +
           32507324-32507938,32508103-32508252,32508498-32508935,
           32509038-32509151,32509256-32509852
          Length = 637

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +1

Query: 487 TTTAGAAT-IVLEPTDTSSLITSVTLAPVEDSITSFTTTAGAATIVLEPTDTSSIINQRI 663
           +TT+ AAT ++L  T +SS ++  + AP    ++ +   + +  ++   T     + Q +
Sbjct: 471 STTSAAATFMLLSSTTSSSSVSDASAAPSSSYLSPYLLNSASPLLMPGATGGGGGM-QHL 529

Query: 664 NLFSLNLPSSIGMIS 708
           NLF  N PSS  +++
Sbjct: 530 NLFG-NSPSSSSLLA 543


>10_01_0154 -
           1764554-1764727,1764829-1764927,1765710-1766172,
           1766255-1766541
          Length = 340

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -3

Query: 593 VNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVINDEALV 420
           V DV  SS    V  + N  VS G+KT ++ P+V     ++  +  + T V+ND  L+
Sbjct: 157 VEDVEISSQTLKVLTIKNTHVSYGNKTTISTPSVTY---LKLWSPLNGTYVLNDMPLL 211


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = -3

Query: 629 GSKTIVAAPAVVVNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVN 483
           G K+ + +PA+     + S+   S+T+ +N+EV+   +T+    AV+V+
Sbjct: 478 GMKSRILSPALPQQSYLSSAELPSLTDHVNEEVAKLDRTVRRITAVLVD 526


>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -3

Query: 617 IVAAPAVVVNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 438
           + A  A +  DV+   +G     V+ND+   G   ++    VVV +      G  A E+ 
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332

Query: 437 NDE 429
           ++E
Sbjct: 333 SEE 335


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 326 YSNLVALRYLKLLVQPQPRLL*WFLL 403
           Y+N  AL+YL      +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572


>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 677 KENKLIRWLIIDEVSVGSKTIVAAPAVVVNDVIESSTGASVTEVINDEVSVGSKTIVAAP 498
           +E  L  +L++   S  S + VA PA+VV+D  + S  +   +   +   V     +AAP
Sbjct: 212 EEEDLANFLVMLSSSSSSSSRVAQPAIVVDDADQESCASGSKDEERNRFLVPQPISMAAP 271


>05_01_0120 - 828834-831143
          Length = 769

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +1

Query: 442 TSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSV--TLAPVEDSITSFTTTAGAAT 615
           +S++     DS     +T+   ++ L P  ++   T V  + +P+  S     + +G  +
Sbjct: 513 SSISSKYSSDSPSLSPSTSSPTSLGLSPASSNFSHTLVPSSRSPLHQSSNEEPSKSGLGS 572

Query: 616 IVLEPTDTSSIINQRINLFSLNLPS 690
           I   P+ TSSI  +R    SL LPS
Sbjct: 573 I-RSPSKTSSIAERRGGFSSLKLPS 596


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,277,570
Number of Sequences: 37544
Number of extensions: 260987
Number of successful extensions: 654
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)