Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31041
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    30   0.39 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   2.1  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   4.8  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    25   8.5  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
 Frame = -2

Query: 661 PTTKGSNRWRPNGLDLWSHHPWSFLANG--------RSVNHLLAII 548
           P T   +RW PNGL   S   W    NG         +VNHL+A I
Sbjct: 428 PETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAVNHLIACI 473


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +1

Query: 193 DLLFPEVGEQEMRKHYTLKHTVTWRLE 273
           DLLF E G  E R HY  KH V  + E
Sbjct: 778 DLLFWETGTFEFRYHYGGKHLVMAKTE 804


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = -2

Query: 715 RDIDVMEENNLVLLNDRNPTTKGSNRWRPNG-----LDLWSH 605
           R + + +EN+ V++   +P  +G+++   NG     LDLW +
Sbjct: 41  RKLQLEDENSFVIMGVADPQIEGNHKIEANGFFKGTLDLWGN 82


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 387 LHC*NDQLYLNQETNDLGRLRGK-TATIETKLISRCEIRRT 506
           L+C N +LYL Q+ N      GK TA ++  L S   I RT
Sbjct: 136 LYCKNGKLYLTQKDNSNLCEDGKGTAYVKNTLSSNVAICRT 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,978
Number of Sequences: 5004
Number of extensions: 60437
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)