Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31041
         (734 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-396|AAF47598.1| 2517|Drosophila melanogaster CG11814-PA...    33   0.53 
AY089588-1|AAL90326.1|   96|Drosophila melanogaster RE16319p pro...    29   6.6  
AE014297-2065|AAF55212.2|   96|Drosophila melanogaster CG33207-P...    29   6.6  

>AE014296-396|AAF47598.1| 2517|Drosophila melanogaster CG11814-PA
            protein.
          Length = 2517

 Score = 32.7 bits (71), Expect = 0.53
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
 Frame = -2

Query: 718  ARDIDVMEE---NNLVLLNDRNPTTKGSNRWRPNGLDLWSHHPWSFLANGRSVNHLLAII 548
            A D  +M E   + +V   D++     + +WR   L  W +       +GR+ N L+   
Sbjct: 1751 ADDWKIMREVFCDKIVATPDQSKVIAITQQWREGLLTNWEYLMTLNQISGRTYNDLMQYP 1810

Query: 547  IFPLML*NMIFLTFVLRISHLLINLVSIVAVLPRSLPKSFVS*FRY 410
            +FP +L N       LR  H    L   +AV      K ++S + Y
Sbjct: 1811 VFPWVLANYNSEVLDLREGHNFRRLGRPIAVQVEENEKHYISNYTY 1856


>AY089588-1|AAL90326.1|   96|Drosophila melanogaster RE16319p
           protein.
          Length = 96

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 515 EDHILQHQWENDNCQEVIHRPAIRKKGPRMVRP*VKT 625
           E+ + Q QWE+D CQ +   P   K  P+  +P +KT
Sbjct: 57  EEQLAQQQWESDVCQAM---PVSGKIYPKYDKPIIKT 90


>AE014297-2065|AAF55212.2|   96|Drosophila melanogaster CG33207-PA,
           isoform A protein.
          Length = 96

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 515 EDHILQHQWENDNCQEVIHRPAIRKKGPRMVRP*VKT 625
           E+ + Q QWE+D CQ +   P   K  P+  +P +KT
Sbjct: 57  EEQLAQQQWESDVCQAM---PVSGKIYPKYDKPIIKT 90


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,722,568
Number of Sequences: 53049
Number of extensions: 607402
Number of successful extensions: 1490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)