Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31037
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    28   1.3  
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    27   1.7  
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    27   1.7  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    27   3.0  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    26   5.2  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   6.9  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    25   6.9  

>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 179 DQGLPNLFCLLPTLRINYF*RPHFCHLLKNHYSESSVGPPR*NYKSPLKPLHNV 18
           + G P+ F  +  L  N    P++ + LK+ Y + +  PP   Y     P H++
Sbjct: 162 EYGYPSQFLPIEKLTSNVAYPPNYNNYLKSPYQQPTNFPPEIQYNYSHSPQHSI 215


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 303 QDKQPYFSTRQIIRLSTPRDLRIHDIVFLMKSQDTRKN 416
           + K+PY    +I RL TPR L+     F +K +   KN
Sbjct: 167 EGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKN 204


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 303 QDKQPYFSTRQIIRLSTPRDLRIHDIVFLMKSQDTRKN 416
           + K+PY    +I RL TPR L+     F +K +   KN
Sbjct: 167 EGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKN 204


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 429 MITFSFYECLDFSLRKQCHVYEGLGVLIAELFA 331
           ++ + FY+C+D+ L    H++    +L+ E  A
Sbjct: 121 VLEYMFYQCIDYRLVVPKHIFARWSLLVGECCA 153


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -1

Query: 594 GNFSTDLDAKRLSQYTIGFRLCCYVMFQMIYD---LFQKNVTSNT*I*NCAYLRHMKSMI 424
           GN+STDLDA    QY + F +    +F +      +   +VT      NC    H    I
Sbjct: 89  GNYSTDLDAGSRFQYKLLFIVFLSNLFAVYLQSLCIRLGSVTGMDLARNCR--EHYNRYI 146

Query: 423 TFSFYECLDFSL 388
            +SFY   + ++
Sbjct: 147 CWSFYVLAEIAI 158


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 306 DKQPYFSTRQIIRLSTPRDLRIHDIVFLMKSQDTRKN 416
           D  P+F+ R II L     LR+++   ++K +++ KN
Sbjct: 379 DALPFFNARVIIALYVEWRLRVYE-TMIIKGEESLKN 414


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 192 FSSFRSGAPKLILSTAHFENKLFLAPPFLS 103
           +  F S A  +I S  HF  +LF   PFL+
Sbjct: 369 YHRFHSPADWVIESRRHFSGELFSVSPFLA 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,222
Number of Sequences: 5004
Number of extensions: 48189
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)