Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31037
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1536 - 27537394-27537576,27537837-27538073,27538164-275390...    27   9.4  
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389...    27   9.4  

>07_03_1536 -
           27537394-27537576,27537837-27538073,27538164-27539078,
           27540028-27540282,27540872-27540940,27542743-27542805,
           27542833-27542901,27542962-27542997
          Length = 608

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 450 YLRHMKSMITFSFYECLDFSLRKQC 376
           YLR M+S + FSF   L ++L   C
Sbjct: 391 YLRGMQSSVQFSFQRALSYNLGSAC 415


>06_03_0157 +
           17337641-17337896,17337975-17338082,17338643-17338908,
           17339933-17340021,17340095-17340198,17340403-17340508,
           17340600-17340675,17340772-17340883,17341719-17342250,
           17343097-17343131,17343924-17343984,17344054-17344132,
           17344266-17344349
          Length = 635

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 435 SCDVGTRNFISKYYLSRFSEINRKS 509
           S D G  NF+   YLSRF  +N K+
Sbjct: 298 SSDSGNSNFLPNSYLSRFDLVNWKA 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,498,777
Number of Sequences: 37544
Number of extensions: 255789
Number of successful extensions: 407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)