Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31037
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    29   2.1  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    29   2.1  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    29   2.1  
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    27   8.4  

>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 125 NNLFSKWAVDKISLGAPDLNEEKYFFS 205
           NN +SKW++ ++++ A   N+ K F+S
Sbjct: 181 NNFYSKWSILEVTMLATKYNDSKNFYS 207


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 125 NNLFSKWAVDKISLGAPDLNEEKYFFS 205
           NN +SKW++ ++++ A   N+ K F+S
Sbjct: 181 NNFYSKWSILEVTMLATKYNDSKNFYS 207


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 125 NNLFSKWAVDKISLGAPDLNEEKYFFS 205
           NN +SKW++ ++++ A   N+ K F+S
Sbjct: 181 NNFYSKWSILEVTMLATKYNDSKNFYS 207


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
           protein R10F2.1 protein.
          Length = 2779

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 273 TKKMIRI*GSQDKQPYFSTRQIIRLSTPRDLRIHDIVFLMKS--QDTRKN*RLSY 431
           T+ +I I    D  P FS+  ++ +S   DL++H+  +++++  +D +KN  + Y
Sbjct: 821 TQVVIFIEDHNDNPPQFSS-SLVEISIREDLKLHEPFYVVQASDKDKKKNGEVRY 874


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 629 SLKRTFVYACLKAILVLIWTLKD-CRNIP*DSDY 531
           SL  +  Y C+K + +  WT  + C NIP DS +
Sbjct: 169 SLMSSCFYLCIKFVEIGTWTPANCCTNIPLDSQF 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,573,303
Number of Sequences: 27780
Number of extensions: 266829
Number of successful extensions: 463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)