Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31035
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 146 4e-36
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 79 5e-16
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 71 2e-13
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 69 9e-13
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 63 5e-11
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 58 1e-09
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 58 2e-09
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 54 3e-08
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 53 4e-08
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 52 6e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 52 8e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 52 1e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 51 1e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 49 8e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 48 1e-06
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 7e-06
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 46 7e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 45 1e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 45 1e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 44 2e-05
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 42 1e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 41 2e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 8e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 38 0.001
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 38 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.005
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 36 0.008
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.018
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.024
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 33 0.056
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.073
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.073
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.097
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.13
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.22
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.68
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 2.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 27 2.8
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 2.8
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 3.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 4.8
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 6.4
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 6.4
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 26 6.4
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 8.4
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 8.4
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 146 bits (353), Expect = 4e-36
Identities = 63/146 (43%), Positives = 103/146 (70%)
Frame = +3
Query: 216 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 395
K+FIGGL++ TTD SL++++EQ+GE++D VM+D T RS+GFGF+T+ V+E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-S 222
Query: 396 RPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 575
+ H +DG+I++PKRA+PREE ++ K+FV G+ D EE+ R +F+ FG ++
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEK------TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDA 276
Query: 576 SVVTDKETGKKRGFGFVEFDDYDPVD 653
+++ DK+TG+ RGFGFV +++ V+
Sbjct: 277 TLMMDKDTGRPRGFGFVTYENESAVE 302
Score = 73.3 bits (172), Expect = 3e-14
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +3
Query: 195 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 374
EE E T K+F+GG+ T+ + F+ Q+G ++D +M D T R +GFGF+TY
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 375 VDEAQNNRPH-KIDGRIVEPKRAVPREEIK 461
V EA ++P+ I G+ VE KRA P+ ++
Sbjct: 301 V-EATMSQPYITIHGKPVEVKRATPKASLR 329
Score = 54.8 bits (126), Expect = 1e-08
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +3
Query: 489 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRV 659
K+F+ GL + ++ LR+YF FG ++ +V+ D TG+ RGFGF+ F + V+ V
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 79.4 bits (187), Expect = 5e-16
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 12/171 (7%)
Frame = +3
Query: 168 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 347
+P++ ++ T +F+G L + D L + +E++G IV V+ D ++ RSKG+G
Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
Query: 348 FITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPEA-----------SATVKK 491
++ + A N +IDGR+V + PR +P A S
Sbjct: 308 YVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDT 367
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 644
+FV L + E+DL F G+I S+ + TD ++G+ +GFG+V F D D
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/89 (30%), Positives = 42/89 (47%)
Frame = +3
Query: 183 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 362
GD EP T +F+G L + T+ L + G+I + + DP++ R KGFG++T+S
Sbjct: 358 GDQLSEPSDT--VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415
Query: 363 QAHMVDEAQNNRPHKIDGRIVEPKRAVPR 449
+ H I GR + PR
Sbjct: 416 DIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 70.9 bits (166), Expect = 2e-13
Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 13/149 (8%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--- 389
++I LD T+ + + Q+GEI + ++KD K +GFGF+ Y+ +A
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVNYANHECAQKAVDEL 321
Query: 390 NNRPHKIDGRIV--EPKRAVPREEIKRPEASATVKK--------LFVAGLKQDIEEEDLR 539
N++ +K V K+ EE+++ ++K LF+ L+ ++++E L+
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 540 EYFSTFGNIVSVSVVTDKETGKKRGFGFV 626
FS FG I S ++TD E GK +GFGFV
Sbjct: 382 AEFSAFGTITSAKIMTD-EQGKSKGFGFV 409
Score = 64.9 bits (151), Expect = 1e-11
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 398
L++G LD T++ L E + G + + V +D T+RS G+ ++ + ++A +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 399 PHK-IDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 575
+ I GR P R + + T +F+ L I+ + L + FS FG I+S
Sbjct: 142 NYTLIKGR---PCRIMWSQRDPSLRKMGT-GNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 576 SVVTDKETGKKRGFGFVEFDDYDPVDRVCLH 668
V D E G +G+GFV FD + + H
Sbjct: 198 KVAVD-ELGNAKGYGFVHFDSVESANAAIEH 227
Score = 63.3 bits (147), Expect = 3e-11
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Frame = +3
Query: 210 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 389
T +FI LD + +L + + +G+I+ V D + +KG+GF+ + E+
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSV----ESA 221
Query: 390 NNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKL-------FVAGLKQDIEEEDLREYF 548
N ++G ++ K+ + R E + V+ L ++ L +I E++ + F
Sbjct: 222 NAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLF 281
Query: 549 STFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 644
FG I S+S+V D + K RGFGFV + +++
Sbjct: 282 GQFGEITSLSLVKD-QNDKPRGFGFVNYANHE 312
Score = 39.5 bits (88), Expect = 5e-04
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 398
LFI L D LK + +G I +M D + K SKGFGF+ Y+ ++A
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEM 424
Query: 399 PHK-IDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDI 521
+ + G+ + A R+E++R + A ++ L+Q +
Sbjct: 425 NQRMLAGKPLYVALA-QRKEVRRSQLEAQIQARNQFRLQQQV 465
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 68.5 bits (160), Expect = 9e-13
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Frame = +3
Query: 195 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 374
E+ +++G LD + TDS L E Q G +V++ + +D GFGF +
Sbjct: 5 EDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQD 64
Query: 375 VDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 551
V+ A Q K+ G+ + RA + + LFV L ++E L + FS
Sbjct: 65 VEYACQILNQVKLFGKPIRVNRASQDRGVN----TLIGANLFVGNLDPLVDERVLYDTFS 120
Query: 552 TFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVD 653
G +V V E G+ +G+GFV +D ++ D
Sbjct: 121 ALGQLVKAPQVARDENGRSKGYGFVSYDSFETAD 154
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD---EAQ 389
LF+G LD + L + + G++V + + RSKG+GF++Y D EA
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 390 NNR 398
NN+
Sbjct: 161 NNQ 163
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 62.9 bits (146), Expect = 5e-11
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 12/152 (7%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 395
LF+ L ++T L F+ G I VV+ +P+T ++G+GF+T+S A
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 396 RPHKIDGRIVEPKRAVPRE--EIKRPEASATVK--------KLFVAGLKQDIEE-EDLRE 542
+ K+ GRI+ A PR+ E+ + A K +L + L I++ + L
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEP 126
Query: 543 YFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 638
+FS FG + + + T K G+ GF FV D
Sbjct: 127 HFSKFGKVREIKIPT-KGGGRMCGFAFVWMKD 157
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +3
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 656
LFV L +++DL +FS G I VVT+ ETG+ RG+GFV F + R
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 359
+F+ L + T+ L + Q+G + ++KDP T RS G GFI +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 58.4 bits (135), Expect = 1e-09
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Frame = +3
Query: 168 KPSESGDDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 344
+P E E E R+ +F+ L R T L +F+EQ G + D +++D + RSKG
Sbjct: 224 RPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGV 283
Query: 345 GFITYSQAHMVDEAQNNRPHKIDGRIV--------EPKRAVPREEIKR-PEASATVKKLF 497
++ + V A ++ G V + ++A E+ R A +L
Sbjct: 284 AYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLC 343
Query: 498 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 632
V+ + ++ +ED++ F FG+I V + D + + +GFG++++
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQY 387
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 57.6 bits (133), Expect = 2e-09
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--N 392
L++G L+ T++ +++ + G+ V V ++++ T + G+ F+ ++ H A N
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
Query: 393 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYF-STFGNIV 569
N+P + + A ++ + A+ +FV L ++ E D+ F S + +
Sbjct: 155 NKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCK 214
Query: 570 SVSVVTDKETGKKRGFGFVEFDD 638
S ++TD +T RG+GFV F D
Sbjct: 215 SAKIMTDPQTNVSRGYGFVRFTD 237
Score = 40.3 bits (90), Expect = 3e-04
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 26/164 (15%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ--------AH 371
+F+G L + + F ++ +M DP+T S+G+GF+ ++ A
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 372 MVDEAQNNRPHKID-------GRIVEPKRAVPRE-------EIKRPE---ASATVKKLFV 500
M + +RP ++ + P VP +P A +FV
Sbjct: 248 MQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307
Query: 501 AGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 632
GL + + EE+L+ F FG IV V + K G GFV+F
Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQF 345
Score = 30.3 bits (65), Expect = 0.30
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 392
+F+GGL ++ LK ++ +GEIV V K KG GF+ + + A N
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYV------KIPPGKGCGFVQFVNRQSAEIAIN 356
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 53.6 bits (123), Expect = 3e-08
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Frame = +3
Query: 207 HTRKLFIGGLDYRTTDSSLKEFYEQ-----WGEIVDVVVMKDPKTKR--SKGFGFITYSQ 365
HT K + R T +KE E+ E + + M K KR +KGF ++ ++
Sbjct: 115 HTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFAT 174
Query: 366 AHMVDEAQNNRPHKIDGRIVEPKR--------AVPREEIKRPEASATVKK-----LFVAG 506
+ A ++GR + K + P + + + + KK LFV
Sbjct: 175 EDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGN 234
Query: 507 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 644
L + + DL+E+F G I V ++T ++TGK +GFGFV+F D D
Sbjct: 235 LDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 53.2 bits (122), Expect = 4e-08
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +3
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 656
LFV L ++EDL FS FG I+S V+ DKETG + F+EFD+ + V++
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.4 bits (120), Expect = 6e-08
Identities = 25/52 (48%), Positives = 33/52 (63%)
Frame = +3
Query: 489 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 644
+LFV L D+ +E L + FS + ++V VV D+E GK RGFGFV F D D
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSD 81
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 52.0 bits (119), Expect = 8e-08
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +3
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 638
+++ L D+ E+D+ FS FG V +++V DKETGK +GF F++++D
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = +3
Query: 168 KPSESG--DDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 341
KP S DY + + ++IG LD+ + + + ++GE VD+ +++D +T +SKG
Sbjct: 17 KPFSSSWHQDYSDSAY---IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKG 73
Query: 342 FGFITYSQAHMVDEAQNNRPH-KIDGRIV 425
F F+ Y A +N + K+ R+V
Sbjct: 74 FAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 395
LF+ G+ R + L++ + ++G + V +M++P TK S+GFGF+++S A +N
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 396 RPHKIDGRIVEPKRA 440
+ GR++ ++A
Sbjct: 163 NSQEFYGRVLNVQKA 177
Score = 48.4 bits (110), Expect = 1e-06
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 447 REEIKRPEASATV-KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGF 623
+E PE S + LFV+G+ ++E++L++ FS FG + V ++ + T RGFGF
Sbjct: 87 KEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGF 146
Query: 624 VEF 632
+ F
Sbjct: 147 LSF 149
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/51 (47%), Positives = 30/51 (58%)
Frame = +3
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 644
L V L D EE+LR+ F FG I V + DKETG+ +GF FV + D D
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +3
Query: 177 ESGDDY--EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 350
ESGD E + + L + L T + L++ + ++G I V + KD +T R+KGF F
Sbjct: 188 ESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247
Query: 351 ITY 359
++Y
Sbjct: 248 VSY 250
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 48.8 bits (111), Expect = 8e-07
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +3
Query: 450 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 629
E+ + + + K+LF+ L E+DL+ F FG + V + DK+T +GF +++
Sbjct: 311 EQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYID 370
Query: 630 FDDYDPVDRVCL 665
F D D R L
Sbjct: 371 FHDADDAVRAYL 382
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +3
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTD---KETGK--KRGFGFVEFDD 638
++V L ++E+ ++ F +S + K GK GFGFVEF D
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKD 674
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 48.0 bits (109), Expect = 1e-06
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +3
Query: 450 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 629
+ + P T + +FV L + EEE L YF G+I V +V D +T +GF +++
Sbjct: 258 DSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 630 FDDYDPVDRVCL 665
F D VD+ L
Sbjct: 318 FKDTMGVDKALL 329
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +3
Query: 201 PEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 377
P+ T++ +F+G L + + L ++ G I V +++DPKT KGF +I + V
Sbjct: 265 PQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGV 324
Query: 378 DEAQNNRPHKI-DGRIVEPKRA 440
D+A K+ +GR + RA
Sbjct: 325 DKALLLNEKKMPEGRTLRIMRA 346
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 632
LFV L +D E L+ +F G + SV + TDK +G+++G+ FVEF
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
Score = 29.9 bits (64), Expect = 0.39
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 359
LF+G L ++ +L+ +++ G++ V + D + R KG+ F+ +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 45.6 bits (103), Expect = 7e-06
Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Frame = +3
Query: 213 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 392
R+L++ +D++ + ++ F+ +G++ V + K + + KGFG++ + + A +
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALS 814
Query: 393 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 572
++ R++ + PRE +++ S+ + + E + +F I S
Sbjct: 815 AAGKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSF-ETTESNKMSTPKKSFEQIKS 873
Query: 573 VSV-VTDKETGKKRGFGFVEFDDYDPVDRVCLH 668
S+ VT+ + F+ Y + RV LH
Sbjct: 874 KSLGVTNVDGTVNEARLRSLFESYGKLYRVVLH 906
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 45.2 bits (102), Expect = 1e-05
Identities = 16/63 (25%), Positives = 38/63 (60%)
Frame = +3
Query: 450 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVE 629
E ++ + S + ++V + + E+L+ +F++ G++ V+++ DK TG +GF ++E
Sbjct: 43 EALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIE 102
Query: 630 FDD 638
F +
Sbjct: 103 FSE 105
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +3
Query: 195 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 374
+E + +++G +DY T L+ + G + V ++ D T KGF +I +S+ +
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108
Query: 375 VDEA 386
V A
Sbjct: 109 VPNA 112
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 44.8 bits (101), Expect = 1e-05
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 638
+FV + D+ E+ + E F+ G + + +V D ETG +G+GF EF D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 359
+F+G + Y ++ + E + Q G + ++ DP+T KG+GF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +3
Query: 225 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH 404
+G L + T++ L +F+ + + +V+ DP T+RS+GFG++ + A + A
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVI--DPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 405 KIDGRIVEPKRAVPREEIKRPEAS 476
+ GR V A PR R E S
Sbjct: 156 DLMGRPVRITVAEPRRSFAREERS 179
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 498 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 644
V L D+ E DL ++F + S+ +V D T + RGFG+VEF+ D
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETAD 144
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/70 (25%), Positives = 39/70 (55%)
Frame = +3
Query: 468 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDP 647
E+++ + +++ GL + +E+L Y + FG + S + D ET +G+GF F++ +
Sbjct: 290 ESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE-EK 348
Query: 648 VDRVCLHQIT 677
+C+ +T
Sbjct: 349 SALICISAMT 358
Score = 36.7 bits (81), Expect = 0.003
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 3/161 (1%)
Frame = +3
Query: 165 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 344
M + E TR ++I GL T+D +L + ++G++ + D +T KG+
Sbjct: 280 MSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339
Query: 345 GFITYSQ---AHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQ 515
GF + + A + A ++ + + + ++ E++ L+++ L
Sbjct: 340 GFACFEEEKSALICISAMTLCGYQCS--FAKESFSARLQSLQDTEST----NLYISNLPL 393
Query: 516 DIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 638
E D+ F I+S V+ D + + RG GF D
Sbjct: 394 HWNESDISTLFKP-SKIISNRVLRDSKE-QSRGVGFARMQD 432
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYD 644
L+V L E+ +R YFS FG ++ + + +++TG + + F+EF+ D
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD 157
Score = 34.7 bits (76), Expect = 0.014
Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQ 389
L++G L + + ++ ++ Q+G ++ + + ++ KT SK + FI + A++V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 390 NNRPHKIDGRIVEPKRAVPREEI 458
+N + + G++++ K +P +++
Sbjct: 167 HN--YLLYGKLLQCK-VIPEDQV 186
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 638
++V + ++ EE + + F G + S +V D E+G+ +G+GF E+ D
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55
Score = 34.3 bits (75), Expect = 0.018
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 395
+++G + Y + + + ++Q G + ++ DP++ + KG+GF Y A N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 38.3 bits (85), Expect = 0.001
Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Frame = +3
Query: 180 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 359
+G Y + E R++++G L Y+ LKEF Q G +++ ++ P SKG I Y
Sbjct: 57 NGQKYTQQE--RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIEY 113
Query: 360 SQAHMVDEA-QNNRPHKIDGRIV---EPKRAVPR--EEIKRPEASATVK------KLFVA 503
S A A + K GR+V E + R P AS+ K +LFV
Sbjct: 114 STAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVG 173
Query: 504 G---------------LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFV 626
L ++ +DL++ F G+++ + ++E G+ RG G V
Sbjct: 174 NVSSISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIV 228
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 359
+++G L + T+D +L + + G ++ + +P T RSKGFG + +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQF 327
Score = 31.9 bits (69), Expect = 0.097
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Frame = +3
Query: 234 LDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 413
L Y LK+ + Q G ++ + + + RS+G G + S A H D
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEG-RSRGIGIVVMSSMKEAMHAIQML-HNTD 247
Query: 414 --GRIVEPKR-AVPREEIKR------PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 566
GR +E + +I+ P + ++V L + +L + F+ G++
Sbjct: 248 FMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCS-DCIYVGNLPWATSDRNLLDLFTDIGSV 306
Query: 567 VSVSVVTDKETGKKRGFGFVEFDD 638
+ + + TG+ +GFG V+F++
Sbjct: 307 IRARIAYEP-TGRSKGFGVVQFEN 329
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 38.3 bits (85), Expect = 0.001
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 11/150 (7%)
Frame = +3
Query: 216 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 395
+LF+G + + T + +F++ +G+I+D +M GFGF+ A + N+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVND 56
Query: 396 RPHK--IDGRI-VEPKRAVPREE--------IKRPEASATVKKLFVAGLKQDIEEEDLRE 542
K + RI VEP R R K P T +L V L +D+ +DL++
Sbjct: 57 FQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKD 116
Query: 543 YFSTFGNIVSVSVVTDKETGKKRGFGFVEF 632
G TD + G G VEF
Sbjct: 117 VMRKAGE----PTFTDAHR-ENPGAGVVEF 141
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 36.3 bits (80), Expect = 0.005
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +3
Query: 219 LFIGGLDYRTTDSS--LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 392
LF+ LD ++ L+E + ++G I + P T+ SKG+GF+++S +A N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 393 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLF 497
++G + KR KR + + +F
Sbjct: 481 T----LNGVLFGKKRLFVNYAEKREDRKKRLSAIF 511
Score = 34.7 bits (76), Expect = 0.014
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +3
Query: 465 PEASATVK--KLFVAGLKQDI--EEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 632
P ++ T+ LFV L +I + L E FS FG I S ++ + T +G+GFV F
Sbjct: 410 PTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.5 bits (78), Expect = 0.008
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 24/177 (13%)
Frame = +3
Query: 198 EPEHTRKLFIGGLDYRTTDSSL-KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---- 362
+PE + +F+G L T DS L F + ++ DP T S+ +GF+ +S
Sbjct: 179 DPEFS--IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKE 236
Query: 363 QAHMVDEAQN----NRPHKIDGRIVEPKRAVPREEIKRPEASATVKK------------- 491
Q H + Q RP +I + + ++ + ++T +
Sbjct: 237 QQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLN 296
Query: 492 --LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDR 656
+FV GL ++ E+DL+ F FG I+++ + K G GFV++ + ++
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK------GCGFVQYSEKSAAEK 347
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 392
+F+GGL ++ L+ ++ +G I+++ K KG GF+ YS+ ++A N
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNI------KIPFGKGCGFVQYSEKSAAEKAIN 350
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.018
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 489 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 632
K++++ L ++ E+ + E FG+++S ++ + G +GF F EF
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.9 bits (74), Expect = 0.024
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNN 395
+++G L + TT+ + + + GEI +++ D TK GF F+ Y +D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 396 RPHKIDGRIV 425
+D RI+
Sbjct: 94 SRTSLDERII 103
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.7 bits (71), Expect = 0.056
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = +3
Query: 219 LFIGGLDYRTTDSSL----KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 386
LF+ L+ ++ L K++++QWG ++ V V+KD + + F+ + +A
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKA 137
Query: 387 QNNRPHKI-DGRIVEPKRAVPREEIK 461
+ + I DGR + +RA I+
Sbjct: 138 LSEAQNTILDGRHIRIERAKVNRTIR 163
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = +3
Query: 165 MKPSESGDDYEEPEHTRKLFIGGLD-YRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 341
M PS P +F+G LD T L + + ++G+++D ++ K
Sbjct: 349 MNPSMMFAAMPPPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAF 408
Query: 342 FGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE 455
F + A+ + PH+ VE ++ P ++
Sbjct: 409 LRFDSQQAAYAAVCGKTRSPHQKKPLRVEFRQLRPMQQ 446
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.3 bits (70), Expect = 0.073
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +3
Query: 201 PEHTRKLFIGGLDYR--TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 374
P L++ LD T S L++ + +G I+ ++ P + SKG+GF+ + Q
Sbjct: 378 PIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA 437
Query: 375 VDEAQNNRPHKIDGRIVEPKR 437
A++ ++G +V KR
Sbjct: 438 AVRAKDT----LNGMMVGKKR 454
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 465 PEASATVKKLFVAGLKQDIE--EEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 632
P + L+V L + + L + FS FG+I+S + +G +G+GFV F
Sbjct: 375 PNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 32.3 bits (70), Expect = 0.073
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 486 KKLFVAGLKQDIEEEDLR-EYFSTFGNIVSVSVVTDKETGKKRGFGFVEF 632
+++ + GL +I EE + ++T + +V+++ +KET K R F F +F
Sbjct: 71 QEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKF 120
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.9 bits (69), Expect = 0.097
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 498 VAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDD 638
V L + E L F FG I+SV++ KE R + FVEFD+
Sbjct: 10 VGNLAPSVTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDE 55
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 489 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFD 635
++FV+ + + E LR +F +FG + + + + TG G + FD
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFD 143
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.7 bits (66), Expect = 0.22
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 468 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDK 593
+ S + +F+ L I E+++RE FG I + +VT++
Sbjct: 200 QQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 210 TRKLFIGGLDYRTTDSSLKEFYEQWGEI 293
+R ++IG D T LKE +E++GEI
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEI 440
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.1 bits (62), Expect = 0.68
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Frame = +3
Query: 180 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEI-VDVVVMKDP-----------K 323
SG + +P +++ GL T+ LKE ++ + + V P +
Sbjct: 194 SGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGE 253
Query: 324 TKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI-VEPKRAVPREEIKRPE 470
+R +GFGF++++ A A K G + + K AV RE+ + E
Sbjct: 254 QRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDE 303
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +3
Query: 213 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 392
R L++ G L +E +G ++ + P+T+ S+ F F+ Y + ++A
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDI-PIPRTRTSRPFAFVEYEDSRDAEDAY- 64
Query: 393 NRPHKIDGRIVEPKRAVPREE-IKRPEASATVKK 491
+++ GR +E V R E K+P S K
Sbjct: 65 ---YEVHGRRLERGGGVLRVEWAKQPPPSGPGSK 95
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 12/48 (25%)
Frame = +3
Query: 567 VSVSVVTDKETGKKR---------GFGFV---EFDDYDPVDRVCLHQI 674
++ +V TDKETG++R G V EFD +DRV +H++
Sbjct: 389 LTAAVTTDKETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEV 436
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 213 VCVQVLHSHRRFPKASYLIFTRLKS*DVNNQLRIGFQFNLLSLCFCSIKYSVSFLSL 43
V +VL SH S + + LKS + NN + GF S+ + ++V F S+
Sbjct: 736 VLARVLVSHEVSRLTSEALLSELKSRNGNNSVEEGFSEEERSILLKLLSWNVKFCSI 792
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +3
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFGFVEFDDYDPVDRVC 662
LF+ L I E++ + F +G + + + +T RG FV +++ R C
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQT---RGTAFVVYENVQDARRAC 67
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +3
Query: 207 HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 308
++R LF+GG+ + L+ +E++G + +++
Sbjct: 404 YSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL 437
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 360 SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLK 512
S H+V A NRP +D ++ P R + I RP+ +++F LK
Sbjct: 432 SSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGR-EQIFKVHLK 481
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 171 PSESGDDYEEPEHTRKLFI 227
PS G YEEPEHTR +I
Sbjct: 76 PSADGG-YEEPEHTRLSYI 93
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 459 KRPEASATVKKLFVAGLKQDIEEEDLREYFS-TFGNIVSVSVVTDKETGKKRGFGFVEFD 635
K ++ + L++ +++ I L+ FG+ V V ++T + RG FV FD
Sbjct: 17 KETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFD 76
Query: 636 DYDPVDR 656
+ + R
Sbjct: 77 NLENASR 83
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 494 QLFNGGTSFWSFNLFPWNCSFWLDNSSVNFVRPIILSFINHMGLRICNK 348
QL SF +F +F + L S N++ + +FI+H+ R+ N+
Sbjct: 1246 QLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNR 1294
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 492 LFVAGLKQDIEEEDLREYFSTFGNIVSVSV 581
++V L ++I ++LR YF FG I+ V
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,108
Number of Sequences: 5004
Number of extensions: 57108
Number of successful extensions: 254
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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