Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31032
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 0.64
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 1.1
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 27 1.1
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 1.5
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 1.5
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 25 3.4
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 25 4.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 7.9
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 24 7.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 24 7.9
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.5 bits (58), Expect = 0.64
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 141 SIFMPFFGLVTSGIPHLIFKWL 76
++ M FG +T IPHLI+ W+
Sbjct: 1492 TLLMLLFGTMTVWIPHLIYFWI 1513
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 1.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 138 IFMPFFGLVTSGIPHLIFKWL 76
++M FG +T+ +PH I+ W+
Sbjct: 1335 MYMLLFGSITAWLPHYIYFWI 1355
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 26.6 bits (56), Expect = 1.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 65 LHTYNHLKIKWGMPEVTNPKNG 130
+H KI W +P+ NPK+G
Sbjct: 397 VHDLTGAKISWALPKPRNPKHG 418
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 1.5
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = -3
Query: 117 LVTSGIPHLIFKWL--YVCRFV 58
L+T G+ +LIF+WL Y RFV
Sbjct: 176 LLTLGLAYLIFRWLPKYFIRFV 197
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 1.5
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 180 WR*RSLIMIRRFVSIFMPFFGLVTSGIPHLIFKWLYVCRF 61
W RS + +S+F+ F G+ I W Y C+F
Sbjct: 984 WHYRSYVHGNSRISVFLESFSCPVPGLEEKIIMWSY-CKF 1022
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 100 NAGSNQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFDK 213
+ G K + K ANKS D+D +P EG +F +++
Sbjct: 213 SVGGGGRKLFRKVANKSSDYDPDLCAPRTEG-SFIYEE 249
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 112 NQPKEWHKDANKSPDHDQGPSS 177
N PKE +A SPDH GP +
Sbjct: 267 NYPKEVILEAIDSPDHIPGPDA 288
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 23.8 bits (49), Expect = 7.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 65 LHTYNHLKIKWGMPEVTNPKNGIKM-LTNRLIMIKDLHLQPKKGKPSRLI 211
LH +H++ + N N K+ + + L+ IKD L P GKP R +
Sbjct: 1259 LHPNDHVR-NTVQQAIENISNNSKLSVVDLLLPIKDRLLSPIFGKPLRAL 1307
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 280 YNKERHLLYYCHHLDYFDHRLAFYQT 203
Y+ E L+ Y HHL D LA T
Sbjct: 543 YHSETELMRYIHHLQSKDLSLAHAMT 568
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 110 VTNPKNGIKMLTNRLIMIKDLHLQPK 187
V +PK+ K++ + +I+D H+QP+
Sbjct: 886 VCSPKSYYKLIPSFEQLIQDFHIQPQ 911
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,386
Number of Sequences: 5004
Number of extensions: 22690
Number of successful extensions: 63
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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