Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31032
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883...    28   2.4  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    27   5.5  
05_06_0134 + 25912474-25912561,25912678-25913230,25914063-259145...    26   7.2  
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454...    26   9.6  
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519...    26   9.6  

>07_03_1042 +
           23487326-23487443,23487555-23487957,23488057-23488397,
           23488621-23489660
          Length = 633

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 112 NQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFD 210
           N  ++WH  +N+  + + GP  P   G   T+D
Sbjct: 526 NSVQQWHHRSNQQMEMEPGPMLPGGLGLGLTYD 558


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 103 AGSNQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFDKK 216
           +G  QP      A  SPD  QG   P+ +GE  T D+K
Sbjct: 252 SGEQQPSGVDP-AELSPDQVQGDVDPSDKGEESTADQK 288


>05_06_0134 +
           25912474-25912561,25912678-25913230,25914063-25914556,
           25914804-25914942,25915511-25915582,25915671-25915742,
           25917202-25917282,25917385-25917545,25917626-25917894,
           25917996-25918122,25918193-25918261,25918366-25918558,
           25918605-25919046
          Length = 919

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 65  LHTYNHLKIK-WGMPEVTNPKNGIKMLTNRLI 157
           L+T    KI  +G+ +V NP+NG  + TN+L+
Sbjct: 733 LNTRLEAKIADFGLSKVFNPENGTHVSTNKLV 764


>12_02_0869 -
           23844378-23844689,23844924-23845233,23845322-23845447,
           23845522-23845727,23845832-23845964,23846045-23846208,
           23846856-23846948,23847074-23847196,23847318-23847384,
           23847473-23847564,23847667-23847779,23847796-23847845,
           23848098-23848189
          Length = 626

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 121 WVGYFRHSPFNFQMVICM*VCLINYYVKLCS 29
           WVG F  SP +F   IC    +  YY  LC+
Sbjct: 106 WVGVF--SPADFSSAICEAYGVPQYYPMLCT 134


>10_08_0799 -
           20650799-20650947,20651022-20651114,20651906-20651934,
           20652039-20652097,20652170-20652283,20652374-20652534,
           20652544-20652663,20652741-20653469,20654980-20655244
          Length = 572

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 79  PFEN*MGNAGSNQPKEWHKDA-NKSPDHDQGPSSP 180
           PF   +GN GSNQP++   +A N   +   G  +P
Sbjct: 285 PFSALLGNQGSNQPRDPATNAPNTGSESTTGTPAP 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,547,998
Number of Sequences: 37544
Number of extensions: 135153
Number of successful extensions: 314
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)