Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31032
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    29   0.94 
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    29   0.94 
U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class c...    29   0.94 
AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.      29   0.94 
U49945-4|AAC47924.1|  535|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    26   6.6  

>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 65  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 229
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 325 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 378


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 65  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 229
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 358 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 411


>U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform a protein.
          Length = 577

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 65  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 229
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 235 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 288


>AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.
          Length = 577

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 65  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 229
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 235 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 288


>U49945-4|AAC47924.1|  535|Caenorhabditis elegans Hypothetical
           protein C02H7.1 protein.
          Length = 535

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 109 SNQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFDKK 216
           S+  KE HK +++S +     SS  K+ E  T D+K
Sbjct: 173 SSSSKERHKSSDRSSEKSSEKSSKEKKKEKSTTDEK 208


>Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical
           protein F25D1.2 protein.
          Length = 357

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 171 RSLIMIRRFVSIFMPFFGLVTSGIPHLIFKWLYVCRFV*LIIM-LNFVQQMNKA 13
           R LI+   F+SI + FF ++TS  P+L      +   V L+I+ ++F    N A
Sbjct: 256 RILILGGYFISIKIQFFLIITSSYPYLPPNHQMIAMTVLLLILSISFTFPCNTA 309


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
            protein.
          Length = 2302

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 112  NQPKEWHKDANKSPDHDQGPSSPAKEGEAF 201
            ++   W K   ++P  D      AK+GEAF
Sbjct: 2136 SESSSWRKSLARAPKFDSKDPKGAKQGEAF 2165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,732,353
Number of Sequences: 27780
Number of extensions: 125095
Number of successful extensions: 374
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)