Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31029
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    28   1.2  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    26   3.7  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   6.4  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.5  

>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
 Frame = -3

Query: 205 IYHLNCHCHRMTVS*HLFISFHKRSVRYE-TRCLLFVFGHISMETPGPPSLVSVTRKPFC 29
           I H+NC     T    L I   +R    +  RCL+   G  +   P P        K F 
Sbjct: 164 IMHINCFGTLHTTKAVLSIMLRERQKNEKGPRCLILTMGSFAGLLPSPYLSTYAGSKAFL 223

Query: 28  SSWPDS 11
           S+W  S
Sbjct: 224 SNWSAS 229


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 417 RCFLSHNSNNIDY-HTITINCFNNDNLLASDFNH 319
           R FLS+ +  ++Y H + + CF N      D+N+
Sbjct: 159 RVFLSYATGCVNYGHNVALTCFENSPKELIDYNY 192


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 116 GLIAHGPFVKRNKQVSTHCHAVTVTVE 196
           G I HG     + Q++TH  AV +TV+
Sbjct: 22  GTIVHGTITSVDMQMNTHLKAVKMTVK 48


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 387 IDYHTITINCFNNDNLLASDFNH 319
           +D+  +TI+ F  D+L   ++NH
Sbjct: 588 LDHEAVTIDDFPEDSLFRKEYNH 610


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 390 YSNCDLESIGDVLLVK*ISINRLFFYRYSNTIYLTLLKDFFQTNV 524
           Y +  ++   D+ ++  ++  R+ FY+YS    ++L  DF+   V
Sbjct: 179 YPSFLIQKFLDMAILPPMAALRILFYQYSKASTMSLTDDFYNKYV 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,027
Number of Sequences: 5004
Number of extensions: 46754
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)