Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31029
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.0  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   7.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 140 VKRNKQVSTHCHA 178
           V+RNK V+ HC A
Sbjct: 721 VERNKHVALHCQA 733


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 140 VKRNKQVSTHCHA 178
           V+RNK V+ HC A
Sbjct: 717 VERNKHVALHCQA 729


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 123  MRPVVSCLSLVTSL 82
            MRPVVSC S  T++
Sbjct: 1705 MRPVVSCASGCTAV 1718


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 7   TRCPASCCRT 36
           TR PA+CC T
Sbjct: 194 TRVPATCCTT 203


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 402 HNSNNIDYHTITINCFNNDN 343
           HN+NN  Y+      +NN+N
Sbjct: 91  HNNNNYKYNYNNKYNYNNNN 110


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 402 HNSNNIDYHTITINCFNNDNLLASDFNH 319
           HN+NN  Y+    N  NN   L  + N+
Sbjct: 91  HNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 402 HNSNNIDYHTITINCFNNDNLLASDFNH 319
           HN+NN  Y+    N  NN   L  + N+
Sbjct: 91  HNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 402 HNSNNIDYHTITINCFNNDNLLASDFNH 319
           HN+NN  Y+    N  NN   L  + N+
Sbjct: 91  HNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 402 HNSNNIDYHTITINCFNNDNLLASDFNH 319
           HN+NN  Y+    N  NN   L  + N+
Sbjct: 91  HNNNNYKYNYNNNNYNNNCKKLYYNINY 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,454
Number of Sequences: 438
Number of extensions: 3361
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)