Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31028
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical...    28   2.8  
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    28   3.7  

>AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.1 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 184 PGSGCDPWRYPRVD--CAIVPASPTAGTT 104
           PGS CDP RY  +D  C++ P + T  TT
Sbjct: 179 PGSACDPDRY-NIDGLCSLNPPTTTTTTT 206


>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical protein
            ZC84.6 protein.
          Length = 1474

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 233  CTTKQVCTKVGGIQ-RACLDPTLPYCNLGECSATPAEGCEP 352
            CT     T   G Q  A +D ++ YC  G+   T ++GC P
Sbjct: 890  CTIGHFVTCPAGFQCMAQIDGSMGYCCKGQPQLTASDGCPP 930


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,326,961
Number of Sequences: 27780
Number of extensions: 210006
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)