Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31024
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa...    27   2.6  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   4.5  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   7.9  

>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -1

Query: 559 PAMFAGPAHLKKEIIESQKKAIEENSM-----LDAKTLRQKK 449
           P M      L KEI E  K+ IEE S      LD  TLR KK
Sbjct: 59  PNMIESVEALSKEIEEKTKRKIEEQSSVPVEELDLVTLRPKK 100


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 136  NFIKDKSKNARKQKLKP-VDAYRLKDR*KDINRKQY*CAKLSKNI 5
            N I D+S + +++  K  V  YR++   ++I+ K Y C  L +NI
Sbjct: 926  NLIVDQSLDTQRRVWKKYVQNYRIQKLTEEISYKNYRCPFLCRNI 970


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 285 FIFITCKCSKRNVSNKLISNIFVHL 359
           +I+ + +C K+NV+N    +IF+HL
Sbjct: 198 YIYFSVRCFKKNVNNP--KDIFLHL 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,423
Number of Sequences: 5004
Number of extensions: 42644
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)