Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31024
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0385 - 24858580-24858721,24858772-24858850,24859155-248593...    30   2.0  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    29   4.7  

>04_04_0385 -
           24858580-24858721,24858772-24858850,24859155-24859302,
           24859939-24860239,24860327-24860407,24860727-24860875,
           24861073-24861215,24861404-24861556,24861664-24861742,
           24861851-24861916
          Length = 446

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = -1

Query: 688 QIDSKEASPDKIAFEYKLKLEDVESIL-KYFKTFEIYIPETKKTPAMFAGPAHLKKEIIE 512
           Q+DS+  +     F Y +KLEDV+S   +Y K   + +P        F G A L +   E
Sbjct: 118 QVDSRTIAASP--FPYNVKLEDVQSFFAQYGKVNSVRLPRHIADKRHFCGTA-LVEFSEE 174

Query: 511 SQKKAIEENSMLDAK 467
            +  A+ +N+++ A+
Sbjct: 175 EEANAVLKNTLVFAE 189


>06_03_1508 - 30653967-30654245,30654342-30654631,30654773-30654841,
            30654854-30654921,30655016-30655492,30655578-30655874,
            30655974-30656824,30656917-30656990,30657270-30657292,
            30657709-30657772,30658098-30658370,30658511-30658587,
            30658686-30658912
          Length = 1022

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 450  FFCLNVLASN-ILFSSIAFFC 509
            F C+ VLA+N +LF  +AFFC
Sbjct: 995  FLCILVLAANGVLFRCVAFFC 1015


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,263,924
Number of Sequences: 37544
Number of extensions: 193831
Number of successful extensions: 362
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)