Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31019
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    30   0.34 
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    28   1.4  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    28   1.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.8  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    27   2.4  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    27   3.1  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    27   4.1  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   5.5  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   5.5  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    26   5.5  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   7.2  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   7.2  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    25   9.6  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   9.6  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   9.6  

>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 656 IEFAKRNSCYGHELVFPVYVKVADGILQYYLVTTCI 763
           I+F K++SCY    VFP    + +  L   L + CI
Sbjct: 92  IDFVKKHSCYNENRVFPFVNDITEDSLLEVLGSACI 127


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 269 CSQQHKKQKDGLRADFI---SNIDVKTWQDRVSKNPESLWNLCEDYKCYPDIWSLH 427
           CSQ  +  K+G+ +  +   S +++ +  +  + NP  + N+C D+  +    SLH
Sbjct: 500 CSQPDESNKEGVASCLLLQKSGMEMTSVLEYSTPNPAEVQNICNDHAKFETSKSLH 555


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 697 CLSCVRKSSRWNSAILPGDDLYPSDVTTLYH 789
           C  C++ S   + + + GD L P D+  + H
Sbjct: 113 CFGCLKLSKSTSGSFVQGDSLQPGDILAVNH 143


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 497 LEEKPELKNYSTEVAFVKWSDPTEILNSSDVKLYPPQTYELTRLSHVKDLDELIEFAKRN 676
           + E+P+L +   EV    ++   +++ S   KLYP  +     LS V   D + EF   N
Sbjct: 313 INEQPKLFSVHDEVIPFSFNPYNDLIFSFKEKLYPLNSSPFNTLSDVPQFD-VSEFVDEN 371

Query: 677 S 679
           S
Sbjct: 372 S 372


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +2

Query: 95  DRWLQLFSL---FGYTNTDLESLHHANGPITPILQKNPIRRHISLRITAIRETFEELGIL 265
           D WL L  L    G  NT  E+   A   +  +++KN  RR++ + +      FEE+ + 
Sbjct: 320 DTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWLNYC--LFEEIDVK 377

Query: 266 LCSQQHKKQKDGLR 307
              +  K  ++ L+
Sbjct: 378 DVDRARKVYQEALK 391


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 387 VKIISAIQTYGHYITGAI 440
           + I+SA Q+YG +ITG I
Sbjct: 196 IDIVSAFQSYGEFITGKI 213


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/75 (21%), Positives = 34/75 (45%)
 Frame = +2

Query: 191 KNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLRADFISNIDVKTWQDRVSKNPE 370
           K  I   +  +  ++R+   EL  ++C +++ K        ++ ++D  T +D +SK   
Sbjct: 360 KELILSSLRYKDVSLRKKSLELLYMMCDEENAKLIVADLLQYLPHLDSVTQEDLISKVAI 419

Query: 371 SLWNLCEDYKCYPDI 415
                  DY+ Y D+
Sbjct: 420 ISETFATDYEWYVDV 434


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 608  TYELTRLSH-VKDLDELIEFAKRNSC 682
            T EL  L+H VKD++E IE    N C
Sbjct: 1279 TLELNGLNHSVKDIEETIELVHPNIC 1304


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -1

Query: 366 GFLLTLSCQVLTSILDMKSALKPSFCFLCC*LHSRIPNSSKVSLMAVILN 217
           GFL TLSC V+  + + +S        L   + SRIPN  KV LM+  +N
Sbjct: 692 GFLSTLSCVVVDEVHE-RSIENDILLTLLKLVISRIPN-LKVILMSATVN 739


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 407 PDIWSLHYWSNWLTP 451
           PDI +LHYW+  L+P
Sbjct: 214 PDIKNLHYWTTRLSP 228


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 563 TEILNS-SDVKLYPPQTYELTRLSHVKDLDEL 655
           TEI+N+   +KLY  +T  L +L H+++  EL
Sbjct: 435 TEIINNIRSIKLYAWETPFLQKLLHIRNTKEL 466


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 344 QDRVSKNPESLWNLCEDYKCYPDIWSLHYWSNWLTPATLPKRFNTAFFVTAL 499
           +D  SK  + + N   D+  Y  + S+H    WL   T  +  N   FV AL
Sbjct: 41  KDMKSKRNKEVKNQMNDWLAYGYLCSVHEAKKWLEEETNNEYQNLDDFVDAL 92


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 17/76 (22%), Positives = 33/76 (43%)
 Frame = +2

Query: 428 YWSNWLTPATLPKRFNTAFFVTALEEKPELKNYSTEVAFVKWSDPTEILNSSDVKLYPPQ 607
           YW +W    +  K+   +     L   P  +N+   +A VK  + TE+  +  ++ +PP 
Sbjct: 40  YWDSWSASKSYTKQKVVSLGNRILHATPYEENFLRAIAPVKKLNDTELHQTLYIE-HPPN 98

Query: 608 TYELTRLSHVKDLDEL 655
               T L+ +    +L
Sbjct: 99  LESSTILAELNRSKQL 114


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 530  TEVAFVKWSDPTEILNSSDVKLYPPQTYELTRLSHVKDLDELIEFAKRNSCYGH 691
            TE   V+  D T   ++S V++      E TR + +K+L  +IEF      Y H
Sbjct: 1320 TEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRH 1373


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
 Frame = +2

Query: 332 VKTWQDRVSKNPESLWNLCEDYKCYPDIWSLHY---------WSNWLTPATLPKRFNTAF 484
           V+T+   V    +    +   ++ +PD WS  Y          + ++  + L K   T +
Sbjct: 20  VQTFYQGVGAEQQQAQQVLTQFQAHPDAWSQAYSILEKSEYPQTKYIALSVLDKLITTRW 79

Query: 485 FVTALEEKPELKNYSTEVAFVKWSDPT 565
            +   E++  ++NY   V     SD T
Sbjct: 80  KMLPKEQRLGIRNYIVAVMIKNSSDET 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,506
Number of Sequences: 5004
Number of extensions: 73678
Number of successful extensions: 221
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)