Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31019
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0401 - 5260308-5260361,5260457-5260507,5260764-5260809,526... 33 0.35
03_06_0688 - 35559239-35559433,35560455-35560792,35561357-355617... 31 0.82
05_05_0077 + 22226326-22226441,22226527-22226601,22227619-222277... 29 3.3
04_01_0175 - 1972361-1972429,1973185-1973334,1974956-1975105,197... 29 3.3
10_08_0964 + 21906737-21907993 29 5.8
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 29 5.8
10_08_0662 + 19662748-19662826,19662868-19663136,19664360-196645... 28 7.6
09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110... 28 7.6
>04_01_0401 -
5260308-5260361,5260457-5260507,5260764-5260809,
5260884-5260933,5261019-5261062,5261231-5261310,
5261391-5261461,5261636-5261725,5262367-5262498,
5263420-5263470,5263615-5263704,5263841-5263878,
5265882-5266002,5267653-5267960,5268742-5268820,
5270019-5270113,5270288-5270428,5270792-5270831
Length = 526
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 164 NGPITPILQKNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLRADF 316
N +T L NP RH+ I + ETF+ G+++ + +K + + L A F
Sbjct: 231 NWILTEKLHINPRDRHLYSAILVLGETFDNRGLMILMRNYKLRPEALAAAF 281
>03_06_0688 -
35559239-35559433,35560455-35560792,35561357-35561785,
35562014-35562110,35562314-35562438,35562758-35562908
Length = 444
Score = 31.5 bits (68), Expect = 0.82
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 500 EEKPELKNYSTEVAFVK-WSDPTEILNSSDVKLYPPQTYELTRLSHVKDLDELIEFAKRN 676
+E EL +Y AF+K D + ++ L P QT R + V DLDE + +
Sbjct: 218 DETVEL-DYFDPYAFIKDLPDLSLVVPKFQPVLLPKQTRSCPRTTLVLDLDETLVHSTLE 276
Query: 677 SCYGHELVFPVYVKVAD 727
C + FPV+ + +
Sbjct: 277 PCEDSDFTFPVHFNLRE 293
>05_05_0077 +
22226326-22226441,22226527-22226601,22227619-22227781,
22227867-22228166
Length = 217
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 452 ATLPKRFNTAFFVTALEEKPELKNYSTEVAFVKWSDPTEILNSSDVKLYPP 604
A P AF + P +Y+ AF +W PT + S D ++PP
Sbjct: 165 AAAPAYHPAAFAQAGGKYVPYATSYAPPAAFWQWIPPTSLDTSKDPVMWPP 215
>04_01_0175 -
1972361-1972429,1973185-1973334,1974956-1975105,
1975370-1975417,1975717-1975793,1975897-1975999,
1977103-1977233,1978793-1978970,1980656-1980676,
1981233-1981290,1981381-1981444,1982261-1982431,
1982526-1982637,1982779-1983021,1983783-1983964,
1984785-1984920
Length = 630
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 536 VAFVKWSDPT--EILNSSDVKLYPPQTYELTRLSHVKDLDELIEFAKRNSCYGHELVFPV 709
VA+ +SD T E L+ +D+ + PP + + D+ I KR YGH +
Sbjct: 138 VAYDGYSDVTVEEPLDGADISVRPPMDIVILIVGTRGDVQPFIAIGKRLQDYGHRVRLAT 197
Query: 710 YVKVADGIL 736
+ + +L
Sbjct: 198 HANFKEFVL 206
>10_08_0964 + 21906737-21907993
Length = 418
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 443 LTPATLPKRFNTAFFVTALEEKPELKNYSTEVAFVKWSDPTEILNSSDVKLYPPQTYELT 622
++P TL R + V L + P N+ST+++F +W I D +P + L
Sbjct: 82 ISPHTLLGRCDIQPPVGGLGDWPN--NFSTQISFYQWQRGASIARFMDATAFPANEFHL- 138
Query: 623 RLSHVKDLDELI 658
+ H D L+
Sbjct: 139 -VCHFAHCDGLV 149
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +2
Query: 143 LESLHHANGPITPILQKNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLR-ADFI 319
++SLH ++ P ++ +R SL + +R T ELGILL S +K G++ D I
Sbjct: 187 IQSLHLSHCSFRPTVEVVSLRSLTSLDLCLVRITDRELGILL-SNSLVLEKLGIKYCDKI 245
Query: 320 SNIDVKTWQDRVS 358
+ + + +R+S
Sbjct: 246 NCLKIPCVLERLS 258
>10_08_0662 +
19662748-19662826,19662868-19663136,19664360-19664571,
19665356-19665623,19665709-19666002
Length = 373
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 416 WSLHYWSN--WLTPATLPKRFNTAFFVTALEEKPELKNYST 532
W LH+W N WL +T+ + F AL+EK L ST
Sbjct: 233 WLLHWWMNQTWLPTSTVIS--GSGSFPNALDEKNRLMALST 271
>09_04_0606 +
18909065-18909218,18909674-18909737,18910895-18911023,
18913680-18913830,18914369-18914491,18915638-18915711,
18916048-18916591,18916948-18917085,18917159-18917203
Length = 473
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 386 CEDYKCYPDIWSLHYWSNWLTPATLPKRFNTAFF 487
C+D++C P +W L L P+ LP F+ A F
Sbjct: 324 CKDWRCVPLLWYLIMVQ--LEPSELPMAFSKAVF 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,103,791
Number of Sequences: 37544
Number of extensions: 457914
Number of successful extensions: 1160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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