Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31019
(807 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80437-7|AAB37622.2| 295|Caenorhabditis elegans Nudix family pr... 74 1e-15
Z49888-6|CAD44128.1| 428|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z49888-5|CAA90065.2| 409|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z47069-5|CAD44131.1| 428|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z47069-4|CAA87339.2| 409|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF003139-3|ABJ99066.1| 152|Caenorhabditis elegans Hypothetical ... 30 2.2
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81554-3|CAB04505.1| 255|Caenorhabditis elegans Hypothetical pr... 29 3.9
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 29 3.9
>U80437-7|AAB37622.2| 295|Caenorhabditis elegans Nudix family
protein 7 protein.
Length = 295
Score = 74.1 bits (174), Expect(2) = 1e-15
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 3/159 (1%)
Frame = +2
Query: 182 ILQKNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLRADFISNIDVKTWQDRVSK 361
++ K + RI A+RE FEE G+L S ++ Q D S + D SK
Sbjct: 48 VVDKTDAKLGDEFRIAAVRELFEESGVL--STKNGWQTSANNPDMTS-LKADIVND-TSK 103
Query: 362 NPESLWNLCEDYKCYPDIWSLHYWSNWLTPATLPKRFNTAFFVTALEEKPELKNYSTEVA 541
+ +C D +L W ++TPA P+RF T F++ ++++P + ++E++
Sbjct: 104 FEQLSGTICAD--------NLIEWDTFITPANYPRRFLTKFYLMLVDDEPAIDLCTSEMS 155
Query: 542 FVKWSDPTEILNSSDVKLY---PPQTYELTRLSHVKDLD 649
W +P E ++ + Y PPQ YELTRLS VKD D
Sbjct: 156 EYNWIEPKECVDEAYAGKYALPPPQVYELTRLSQVKDWD 194
Score = 26.6 bits (56), Expect(2) = 1e-15
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 8 RCLSTRTGRGA--FPNSVVFPGGVTEDAD 88
R L + G A PN++VFPGGV + D
Sbjct: 25 RVLMLKRGTTAKFMPNTMVFPGGVVDKTD 53
>Z49888-6|CAD44128.1| 428|Caenorhabditis elegans Hypothetical
protein F47A4.1b protein.
Length = 428
Score = 33.9 bits (74), Expect = 0.14
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Frame = +2
Query: 431 WSNWLTPATLPKRFN-TAFFVTALEEKPELK--NYSTEVAFVKWSD-------PTEILNS 580
WSNW +T P + T F + ++E + NY+ + F++W D P E+ +
Sbjct: 174 WSNWRIKSTGPCVMDLTKFPMDSIECTLTFESFNYNKDEVFMRWGDPPLTIFKPIELPDF 233
Query: 581 SDVKLYPPQTYELTRLSHVKDLDELIEFAKRNSCYGHELVFPVYVKVADGILQYYLVTTC 760
+ ++L + +L+ F +R+ Y + P Y+ V + +YL
Sbjct: 234 TMTNFSTSNKFQLYAAGYWSELNVNFLFRRRSGWYLLQGYIPTYMTVFISWIPFYLGPKA 293
Query: 761 IP 766
IP
Sbjct: 294 IP 295
>Z49888-5|CAA90065.2| 409|Caenorhabditis elegans Hypothetical
protein F47A4.1a protein.
Length = 409
Score = 33.9 bits (74), Expect = 0.14
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Frame = +2
Query: 431 WSNWLTPATLPKRFN-TAFFVTALEEKPELK--NYSTEVAFVKWSD-------PTEILNS 580
WSNW +T P + T F + ++E + NY+ + F++W D P E+ +
Sbjct: 155 WSNWRIKSTGPCVMDLTKFPMDSIECTLTFESFNYNKDEVFMRWGDPPLTIFKPIELPDF 214
Query: 581 SDVKLYPPQTYELTRLSHVKDLDELIEFAKRNSCYGHELVFPVYVKVADGILQYYLVTTC 760
+ ++L + +L+ F +R+ Y + P Y+ V + +YL
Sbjct: 215 TMTNFSTSNKFQLYAAGYWSELNVNFLFRRRSGWYLLQGYIPTYMTVFISWIPFYLGPKA 274
Query: 761 IP 766
IP
Sbjct: 275 IP 276
>Z47069-5|CAD44131.1| 428|Caenorhabditis elegans Hypothetical
protein F47A4.1b protein.
Length = 428
Score = 33.9 bits (74), Expect = 0.14
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Frame = +2
Query: 431 WSNWLTPATLPKRFN-TAFFVTALEEKPELK--NYSTEVAFVKWSD-------PTEILNS 580
WSNW +T P + T F + ++E + NY+ + F++W D P E+ +
Sbjct: 174 WSNWRIKSTGPCVMDLTKFPMDSIECTLTFESFNYNKDEVFMRWGDPPLTIFKPIELPDF 233
Query: 581 SDVKLYPPQTYELTRLSHVKDLDELIEFAKRNSCYGHELVFPVYVKVADGILQYYLVTTC 760
+ ++L + +L+ F +R+ Y + P Y+ V + +YL
Sbjct: 234 TMTNFSTSNKFQLYAAGYWSELNVNFLFRRRSGWYLLQGYIPTYMTVFISWIPFYLGPKA 293
Query: 761 IP 766
IP
Sbjct: 294 IP 295
>Z47069-4|CAA87339.2| 409|Caenorhabditis elegans Hypothetical
protein F47A4.1a protein.
Length = 409
Score = 33.9 bits (74), Expect = 0.14
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Frame = +2
Query: 431 WSNWLTPATLPKRFN-TAFFVTALEEKPELK--NYSTEVAFVKWSD-------PTEILNS 580
WSNW +T P + T F + ++E + NY+ + F++W D P E+ +
Sbjct: 155 WSNWRIKSTGPCVMDLTKFPMDSIECTLTFESFNYNKDEVFMRWGDPPLTIFKPIELPDF 214
Query: 581 SDVKLYPPQTYELTRLSHVKDLDELIEFAKRNSCYGHELVFPVYVKVADGILQYYLVTTC 760
+ ++L + +L+ F +R+ Y + P Y+ V + +YL
Sbjct: 215 TMTNFSTSNKFQLYAAGYWSELNVNFLFRRRSGWYLLQGYIPTYMTVFISWIPFYLGPKA 274
Query: 761 IP 766
IP
Sbjct: 275 IP 276
>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
protein F47A4.5 protein.
Length = 1071
Score = 30.7 bits (66), Expect = 1.3
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Frame = +2
Query: 53 VVFPGGVTEDADEDDRWLQLFSLFGYTNT-DLESLHHANGPITPILQKNPIRRHISLRIT 229
V P G +ED D+R FSLF T+ DL L H + + + ++R
Sbjct: 298 VFAPVGFSEDVSLDER---PFSLFRATDKKDLMDLLHLCDEKSFLFTSLDMS---TMRAD 351
Query: 230 AIRETFEELGILLCSQQHKKQKDGL----RADFISNIDVKTWQDRVSKNPESLWNLCEDY 397
+R EEL I + + H R DF S+ +KT + + L LC
Sbjct: 352 ILRSKIEELVIQIRLKPHYHMIHVAIATDRLDFFSDGMIKTMNETLEPFESQLRCLCHTE 411
Query: 398 KCYP 409
CYP
Sbjct: 412 NCYP 415
>AF003139-3|ABJ99066.1| 152|Caenorhabditis elegans Hypothetical
protein F53G12.9 protein.
Length = 152
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 326 IDVKTWQDRVSKNPESLWNLCEDYKCYPD--IWSLHYWSNWLTP 451
+D TW S+ + W L +D K D + L++W NW+ P
Sbjct: 102 LDELTWMLAYSRGQDFTW-LRDDRKIIEDFGLVQLYFWRNWIVP 144
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 6 LGASRLGRVAVRFQTAWCSPAELP--KTLTKT 95
LG S+L + R AWC E+P K TKT
Sbjct: 682 LGTSKLNYIDPRITVAWCKKFEVPLEKVFTKT 713
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 6 LGASRLGRVAVRFQTAWCSPAELP--KTLTKT 95
LG S+L + R AWC E+P K TKT
Sbjct: 754 LGTSKLNYIDPRITVAWCKKFEVPLEKVFTKT 785
>Z81554-3|CAB04505.1| 255|Caenorhabditis elegans Hypothetical
protein F57G4.6 protein.
Length = 255
Score = 29.1 bits (62), Expect = 3.9
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 5/136 (3%)
Frame = +2
Query: 284 KKQKD-GLRADFISNIDVKTWQDRVSKNPESLWNLCEDYKCYPDIW-SLHYWSNW-LTPA 454
K +KD G A+ + +K W S+ + C DI S ++ + A
Sbjct: 69 KIEKDLGFLAEDRGSNAIKIWNSLKSEYLRARKKKCPSGSGLDDIENSFDFYQDMSFFEA 128
Query: 455 TLPKRFNTAFFVTALEEKPELKNYSTEVAFVKWSDPTEILNSSDVKLYPPQTYELTR--L 628
+L KRF+T ++L+ L NY + + ++ S + Y T E L
Sbjct: 129 SLSKRFSTPISSSSLDTTTRLANYESNNVLTPKRNYKKVKEESTYEKYKKDTAECDEIML 188
Query: 629 SHVKDLDELIEFAKRN 676
+ V L EL E KR+
Sbjct: 189 TCVSLLKELKEGEKRS 204
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 6 LGASRLGRVAVRFQTAWCSPAELP--KTLTKT 95
LG S+L + R AWC E+P K TKT
Sbjct: 754 LGTSKLNYIDPRITVAWCKKFEVPLEKVFTKT 785
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,071,528
Number of Sequences: 27780
Number of extensions: 408078
Number of successful extensions: 1070
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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