Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31019
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -3

Query: 784 IMSLHLRDTGRHQVILQNSIGYFYVHRKDKFVTITTVALGKFNQFIQVLHVRQPG*FVC 608
           I    + D+G++  I+ NS+G   V   +  +T+T     +     Q +   +P  F C
Sbjct: 274 IREARVEDSGKYLCIVNNSVGGESV---ETVLTVTAPLGAEIEPSTQTIDFGRPATFTC 329


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 557 DPTEILNSSDVKLYPPQT 610
           D    LN SD+ LYP QT
Sbjct: 782 DVKTTLNISDIALYPSQT 799


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = +1

Query: 697 CLSCVRKSSRWNSAILPGDDLYPSDVTTL 783
           C  C+ K  +W   ++    L+P  + T+
Sbjct: 220 CYFCIWKGVKWTGKVVYFTSLFPYALLTI 248


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = +1

Query: 697 CLSCVRKSSRWNSAILPGDDLYPSDVTTL 783
           C  C+ K  +W   ++    L+P  + T+
Sbjct: 273 CYFCIWKGVKWTGKVVYFTSLFPYALLTI 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,622
Number of Sequences: 438
Number of extensions: 5258
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)