Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31018
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    28   1.5  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   4.5  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   7.9  

>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
 Frame = +2

Query: 425 PVNVKRSLLIIIKWMI---MHSLSKEQKRTFENISKILLSF------FFVNCKSLHSIKQ 577
           P +  +S+L    W +   + SL+ E  R   N SK+ LSF      F +    LH +  
Sbjct: 20  PADTAQSVLESFNWDVQEAIESLTGESSRVDRN-SKLGLSFGVFQSVFSLLFSGLHKLWM 78

Query: 578 SRFLCPYIYMYASIFKTTQRIL 643
                P I  +  IF TT+R+L
Sbjct: 79  ILSRVPLISTFIPIFGTTKRVL 100


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 461 KWMIMHSLSKEQKRTFENISKILLSFFFVN 550
           ++++ H LS+  K   +NI KILL  F  N
Sbjct: 270 QYLLFHLLSRCGKHAVQNIHKILLPIFQKN 299


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 348 NESRDKLRGQQTYSYLIMR*RDCVTIQSTLSGLC 449
           NE+  ++ G+Q Y+   +R   C  +QS+ +G+C
Sbjct: 193 NETVAQVSGKQIYNTEKIRSNICDAVQSSRNGIC 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,743
Number of Sequences: 5004
Number of extensions: 50620
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)