Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31015
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    29   0.38 
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.51 
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    27   2.7  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    26   3.6  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   6.2  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   6.2  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   8.3  

>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 84  KRELQNQSEKGYQARYEEVKEAHDRLAVE-FDNSKAEFERQLMNVKKQ 224
           KR+ ++QSE  + AR E+ K  HD L  E  +  + +   Q+ +++KQ
Sbjct: 496 KRKRKDQSEDNFGARDEDWKVYHDVLTAEQLEEERKKLLDQIYSLEKQ 543


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +3

Query: 48  ALKCLFELLVDA-KRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQ 224
           A+  + E L  A ++E+++QS + +++   E  E H +L+      +  FE++L     +
Sbjct: 202 AIPIITETLDHAHEQEIKDQSLR-FESSLNEANELHGKLSKIQQEQEHLFEQRLREKVSE 260

Query: 225 SEQKLTALL 251
            E KL ALL
Sbjct: 261 MESKLEALL 269


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 78  DAKRELQNQSEKGYQARYEEVKEAHDRLAVEFDN-SKAEFERQLMNVKKQ 224
           +A REL+ Q +  YQA     +E       E +  +K + ER+++  KK+
Sbjct: 258 EAARELRRQQDNAYQASLARDRERQAFARAEEERLAKEKEEREIVQKKKK 307


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 84  KRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSE 230
           +REL    +K    R +E ++ H +L  +FD  KA   R +   K + E
Sbjct: 62  QRELVPAKKKKATIRIQEFRQKHVQLLEKFDELKAHV-RDIAQAKNRKE 109


>SPBC17D11.05 |tif32||translation initiation factor
            eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 78   DAKRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQKLTALLAL 257
            +A REL  Q E   +A  E  + A +    E      + ERQ   ++++ +++++  LA 
Sbjct: 804  EANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLERQ-RRIQQERDEEISRKLAE 862

Query: 258  QRGVVRGDKG 287
            +    R + G
Sbjct: 863  KAAARRANIG 872


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 63  FELLVDAKRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSE 230
           F  L   K+ LQ Q+E  ++  YE++KE + RL  E  +  ++ E+    +    E
Sbjct: 173 FSELFTQKQMLQLQNEN-FKDDYEKIKEENKRLYKERKSFLSKIEKSACEIHDLKE 227


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 198 RQLMNVKKQSEQKLTALLALQRGVVRGDKGEACKHLHNVIQ 320
           R+L    + SE+++TA       ++R  +  A  HL NV++
Sbjct: 755 RKLGEDVRASEKRITATTRQLESMIRLSEAHAKMHLRNVVE 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,417,859
Number of Sequences: 5004
Number of extensions: 15476
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)