Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31015
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 33 0.13
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 33 0.13
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 31 0.69
03_02_0559 - 9461789-9462424 30 1.6
05_01_0328 - 2571155-2571627,2571894-2572197 29 2.1
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780... 29 2.8
02_05_0563 + 29998291-29998753,29999256-29999468,29999550-299996... 29 2.8
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 28 4.8
04_04_1340 + 32766773-32767582 28 4.8
02_03_0306 - 17540258-17540610,17544063-17544128,17544266-175443... 28 4.8
03_03_0065 + 14192725-14192813,14193004-14193088,14193971-141940... 28 6.4
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 28 6.4
>09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/81 (23%), Positives = 42/81 (51%)
Frame = +3
Query: 3 RTQWDNIQSMLEAKVALKCLFELLVDAKRELQNQSEKGYQARYEEVKEAHDRLAVEFDNS 182
R +W+ ++SM EAK L+ +F + DA+ +++ + + +E+KE L +S
Sbjct: 839 RGRWNQLRSMAEAKSLLQYIFNVAADARCQVREK-----EMEIKEMKEQMTELVTILRHS 893
Query: 183 KAEFERQLMNVKKQSEQKLTA 245
++ +K++ + +TA
Sbjct: 894 ESRRRETEKQLKQREQAAVTA 914
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/78 (19%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +3
Query: 18 NIQSMLEAKVALKCLFELLVDAKRELQN-QSEKGYQARYEEVKEAHDRLAVEFDNSKAEF 194
++++ L+++ LF+L + ++ + Q+ K Y +Y+E+ +++ + +++ +F
Sbjct: 954 DLETKLKSRKENDELFQLKEELEKYKEEAQANKSYMLQYKEIANSNESALKQMESALQDF 1013
Query: 195 ERQLMNVKKQSEQKLTAL 248
+ + +KK E ++T L
Sbjct: 1014 KTESETIKKSLEDEITKL 1031
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 31.1 bits (67), Expect = 0.69
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 69 LLVDAKRELQNQ--SEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQKLT 242
LL + +++L Q EK + + +KE DR+ VE ++ E++ + + +E K
Sbjct: 533 LLKEKQKDLTEQWEREKSVMTKIQSIKEEIDRVNVEIQQAEREYD-----LNRAAELKYG 587
Query: 243 ALLALQRGVVRGDK 284
+L ALQR + +K
Sbjct: 588 SLNALQRQLQTTEK 601
>03_02_0559 - 9461789-9462424
Length = 211
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +3
Query: 114 GYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQKLTALLALQRGVVRGDKGEA 293
G + EEV++ ++ A ++AE L +KK++ Q+L A L R V + EA
Sbjct: 118 GVKDASEEVRQLEEQAAAVLKAARAEIAAALNKMKKETTQELEAKLDEGRRRVEAELVEA 177
Query: 294 CKHL 305
+L
Sbjct: 178 LANL 181
>05_01_0328 - 2571155-2571627,2571894-2572197
Length = 258
Score = 29.5 bits (63), Expect = 2.1
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Frame = +3
Query: 12 WDNIQSMLEAKV--ALKCLFELLVDAKRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSK 185
W + E K+ + CL L K + + +K YQ + D F K
Sbjct: 98 WGRRKKPKEVKILSSAHCLDHLFTKGKPKSAQELDKLYQ-----IVVICDHCEDSFRQDK 152
Query: 186 AEFERQLMNVKKQSEQKLTALLALQRGV-VRGDKGEACKHLHNVIQAQQDKLEQV 347
A +++ + + +E L LQ V V G KG ACKH H + + L+ +
Sbjct: 153 AVNKQRRYSEARITEIDCEKDLMLQTVVCVAGPKGRACKHSHPALAPSKMTLQSM 207
>11_06_0632 +
25674807-25675477,25676472-25677861,25677948-25678083,
25678185-25678282,25678470-25678535,25678699-25678827,
25679570-25679746,25680576-25680614
Length = 901
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 75 VDAKRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFE 197
++ +REL+ Q E+ QA KEA +R + E +KAE E
Sbjct: 525 LEKERELEQQKERERQAMERATKEARERASAE-ARAKAERE 564
>02_05_0563 +
29998291-29998753,29999256-29999468,29999550-29999667,
30000227-30000355,30000438-30000810,30000890-30001147,
30001192-30001227
Length = 529
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 63 FELLVDAKRELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKA 188
FELL+ AKRE + + K K+ +D+L +EFD A
Sbjct: 443 FELLMPAKRERKRKLNK-LSETIRRKKQEYDQLDIEFDLDSA 483
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 126 RYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQKLTALLALQRGVV 272
+ EE ++ ++RL E D KAE E+Q +K +E+ A AL+ G V
Sbjct: 595 KIEEHRKKYERLRKERDIKKAEMEKQ----RKHAEEVSAASAALKDGDV 639
>04_04_1340 + 32766773-32767582
Length = 269
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 183 KAEFERQLMNVKKQSEQKLTALLALQRGVVRG 278
K E ERQ+ K+ +E++L +AL+RG+ G
Sbjct: 220 KREIERQMAAAKQFAEEQLAEEVALKRGISVG 251
>02_03_0306 -
17540258-17540610,17544063-17544128,17544266-17544397,
17544530-17544685,17545216-17545375
Length = 288
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +3
Query: 90 ELQNQSEKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQ 233
E +Q+E+G + E+++E H +A +FD + +F+ M V+++ Q
Sbjct: 56 EQSHQAEEGEEHDQEQIQEYHVTIAHDFDLNMHDFDLN-MQVEEEDYQ 102
>03_03_0065 +
14192725-14192813,14193004-14193088,14193971-14194040,
14194730-14194827,14194931-14195101,14196192-14196224,
14196762-14196820,14197143-14197190,14197399-14197480,
14198317-14198475,14199036-14199093,14199801-14199949,
14200403-14200503,14200574-14200643,14201088-14201147,
14201883-14201939,14202247-14202315,14202485-14202562,
14202996-14203097,14203203-14203274,14203361-14203648
Length = 665
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +3
Query: 168 EFDNSKAEFERQLMNVKKQSEQKLTALLALQRGVVRGDKGEACKHLHNVIQAQQDKLEQV 347
+FD++K +FE+ ++ V K SE TA L + ++ + +A K + + ++ +V
Sbjct: 536 DFDDAKKDFEK-MIAVDKSSEPDATAALNKLKQTIQETEKKARKQFKGLFDKKPGEISEV 594
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 108 EKGYQARYEEVKEAHDRLAVEFDNSKAEFERQLMNVKKQSEQKLTALLALQR 263
EK R +KE DR+ +E + ++ E++ + + +E K LL+LQ+
Sbjct: 619 EKSLMTRIRSIKEETDRVNLEIEAAEREYD-----LNRAAELKYGTLLSLQK 665
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,792,205
Number of Sequences: 37544
Number of extensions: 112112
Number of successful extensions: 516
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -