Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31014
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039... 64 1e-10
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448... 54 1e-07
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 33 0.16
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 30 1.5
09_06_0248 + 21848346-21848907,21849026-21849583,21849889-218499... 29 3.5
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 29 3.5
02_03_0240 - 16739628-16740369,16740392-16740978 29 3.5
07_03_1039 - 23454130-23454552,23454859-23455536 28 6.2
11_01_0441 - 3363069-3363137,3363273-3363430,3363549-3363613,336... 28 8.2
10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523... 28 8.2
08_02_1411 + 26880766-26880911,26881000-26881097,26881207-268812... 28 8.2
>04_04_0337 -
24503417-24503523,24503612-24503715,24503828-24503927,
24504009-24504106,24504403-24504455,24504508-24504588,
24504668-24504739,24504882-24504953,24505045-24505137,
24505240-24505307,24505388-24505658
Length = 372
Score = 63.7 bits (148), Expect = 1e-10
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Frame = +2
Query: 41 YRAITYLKRPEVLFINGATDRSVPMKPGLLALGTGVFADLVTAEVKREPVLLGKPGKAFG 220
Y + + P LFI D + G G + K+EP+++GKP
Sbjct: 238 YGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMM 297
Query: 221 EFAMKRAGITDPSRVLFIGDMIAQDIGLGKAVGFNTLLVLTNTTKEEML---SHTIRPDY 391
++ K+ GIT S++ +GD + DI G+ G TLLVL+ T +ML ++I+PD+
Sbjct: 298 DYLAKKFGIT-TSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSVQMLQSPDNSIQPDF 356
Query: 392 YAESLGSIVPL 424
Y + + L
Sbjct: 357 YTNQISDFLTL 367
>09_02_0119 -
4481522-4481580,4481615-4481718,4483132-4483231,
4483307-4483404,4483688-4483828,4485736-4485788,
4486578-4486649,4487730-4487801,4487895-4487987,
4489040-4489107,4489268-4489358
Length = 316
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/107 (29%), Positives = 53/107 (49%)
Frame = +2
Query: 23 INLPKMYRAITYLKRPEVLFINGATDRSVPMKPGLLALGTGVFADLVTAEVKREPVLLGK 202
+N +Y ++ + P LFI D + M G G V+ V++EP+++GK
Sbjct: 192 VNRLLLYASLCIRENPGCLFIATNRDPTGHMTSVQEWPGAGTMVAAVSCSVQKEPIVVGK 251
Query: 203 PGKAFGEFAMKRAGITDPSRVLFIGDMIAQDIGLGKAVGFNTLLVLT 343
P +F +K + + SR+ +GD + DI G+ G TLLVL+
Sbjct: 252 PSSFLMDFLLKSFNL-ETSRMCMVGDRLDTDILFGQNTGCKTLLVLS 297
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +2
Query: 179 REPVLLGKPGKAFGEFAMKRAGITDPSRVLFIGDMIAQDIGLGKAVGFNTLLV 337
+ P+L KP E A++ A + DP + +F D + ++I GKA GF+T++V
Sbjct: 578 KSPILC-KPSIEAMEAAIRIANV-DPEKTIFFDDSV-RNIASGKAAGFHTVIV 627
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 244 AGSLHSEFTESFSWLPKQHGLSFHFCRNQVCKDSCP 137
+GS H E W +HG ++ C N CK CP
Sbjct: 470 SGSGHCEINNGGCWKDSRHGRTYSACTNDGCK--CP 503
>09_06_0248 +
21848346-21848907,21849026-21849583,21849889-21849980,
21850122-21850167,21850236-21850423
Length = 481
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 98 DRSVPMKPGLLALGTGVFADLVTAEVKREPVLLGKPGKAFGEFAMKRAGITDPSRVLFIG 277
D S + G + + + D V+ P L G+P A + A+ +TD + V +G
Sbjct: 261 DNSKDWQKGFMVDSSDITVDATCCNVELLPKLEGRPAMAKLQVALPTLSLTDANVVYVMG 320
Query: 278 DMIAQD 295
+ A D
Sbjct: 321 KVDASD 326
>08_01_0722 +
6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -1
Query: 321 KPTAFPRPIS*AIMSPIKRTRLGSVMPARFIANSPKAFPGFPSSTGSRFTSAVTRSAKTP 142
KP + P+P + P+ T+ GSV PAR + F G SS+ S+ SA
Sbjct: 578 KPPSPPKPKKPKV-GPVGPTK-GSVEPARMRRRLSRLFKGSGSSSSHHDESSTRSSADIM 635
Query: 141 VPKAKRP 121
+ +A+ P
Sbjct: 636 MEEAEAP 642
>02_03_0240 - 16739628-16740369,16740392-16740978
Length = 442
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -1
Query: 228 ANSPKAFPGFPSSTGSRFTSAV--TRSAKTPVPKAKRPGF 115
++ P+ PG+PSS SR TS SA TP P ++RP F
Sbjct: 200 SSPPRGEPGWPSS-ASRSTSGAPCPASASTP-PPSRRPAF 237
>07_03_1039 - 23454130-23454552,23454859-23455536
Length = 366
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -1
Query: 267 RTRLGSVMPARFIANSPKAFPGFPSSTGSRFTSAVTRSAKTPVPKAKRPGFIGTDLS 97
R R+ ++PA +A + A + RF + V +A +PVP A G D +
Sbjct: 11 RVRISPLIPAAAMAGTAGAAAASYAQHRRRFCAIVATAAASPVPAAAAAAATGFDFN 67
>11_01_0441 -
3363069-3363137,3363273-3363430,3363549-3363613,
3363709-3363777,3363881-3363973,3364081-3364184,
3364327-3364410,3364486-3364693,3364809-3364880,
3365005-3365080,3365788-3365900,3366006-3366153,
3366996-3367073,3367968-3368097,3368296-3368486,
3368644-3368704,3368847-3368956,3369090-3369312
Length = 683
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = -1
Query: 282 MSPIKRTRLGSV-MPARF---IANSPKAFPGFPSSTGSRFTSAVTRSAKTPVPKAKR 124
MSP +R + V +PAR +A+ P PGF T FTSA TPV A+R
Sbjct: 145 MSPAERVQEAVVCLPARLESVLADPPS--PGFRRWTIRDFTSAYISGEITPVMVARR 199
>10_02_0094 -
5228472-5228703,5229040-5229133,5230627-5230675,
5231229-5231321,5231404-5231635,5232416-5232506,
5232693-5232784,5232862-5232970,5233331-5233430,
5233614-5233754,5233846-5234010,5234088-5234279,
5234409-5234537,5234619-5234734,5234821-5234965,
5235039-5235102,5235241-5235463,5235584-5236244,
5236909-5237250
Length = 1089
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 197 GKPGKAFGEFAMKRAGITDPSRVLFIGDMIAQDIGLGKAVGFNTLLVLTNTTKEEMLSHT 376
G+ KAFG + + + P RV+F + A A F+ L +T E S
Sbjct: 545 GQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKP 604
Query: 377 IRPDY 391
I PD+
Sbjct: 605 ILPDH 609
>08_02_1411 +
26880766-26880911,26881000-26881097,26881207-26881274,
26881595-26881683,26881786-26882007,26883056-26883790,
26883880-26884078,26884319-26884404,26886175-26886536,
26887290-26887921
Length = 878
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 378 IVCDNISSLVVFVKTNKVLKPTA--FPRPIS*AIMSPIKRTRLGSVMPARFIANSPKAFP 205
++ +++ S V+ V+ TA + ++P +R ++ + + P+ FP
Sbjct: 620 VLAEDVESAVIVAALTHVISSTAAEVTTAVPPVTVAP-QRAATATMFGQQVMQQPPRGFP 678
Query: 204 GFPSSTGSRFTS 169
PSS+GS T+
Sbjct: 679 PLPSSSGSAATA 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,787,280
Number of Sequences: 37544
Number of extensions: 321999
Number of successful extensions: 677
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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