Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31013
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   118   4e-28
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...   106   1e-24
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    28   0.59 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   0.78 
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   7.3  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.3  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =  118 bits (284), Expect = 4e-28
 Identities = 55/85 (64%), Positives = 69/85 (81%)
 Frame = +2

Query: 107 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 286
           M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD  K+++ GK
Sbjct: 1   MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60

Query: 287 GVLTAIKNINELIAPELTKANLEVT 361
           GVL A+ N+N +IAP + KANL+VT
Sbjct: 61  GVLKAVGNVNNIIAPAVVKANLDVT 85



 Score = 52.8 bits (121), Expect = 2e-08
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +3

Query: 366 QREIDELMLKLDGTENKSKLGANAILGVSL 455
           Q+  DE +LKLDGTENKSKLGANAILGVS+
Sbjct: 87  QKAADEFLLKLDGTENKSKLGANAILGVSM 116


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score =  106 bits (255), Expect = 1e-24
 Identities = 49/83 (59%), Positives = 65/83 (78%)
 Frame = +2

Query: 113 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGV 292
           I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG  EA ELRDN K+++ GKGV
Sbjct: 4   IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63

Query: 293 LTAIKNINELIAPELTKANLEVT 361
             A+ N+N +I P L K+++++T
Sbjct: 64  TIAVHNVNNIIGPALVKSDIKIT 86



 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 22/30 (73%), Positives = 27/30 (90%)
 Frame = +3

Query: 366 QREIDELMLKLDGTENKSKLGANAILGVSL 455
           QR IDE M+KLDGT +KSKLGAN+I+GVS+
Sbjct: 88  QRGIDEFMIKLDGTNDKSKLGANSIVGVSM 117


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 28.3 bits (60), Expect = 0.59
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +2

Query: 143 DSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL 322
           D +G    +VD       ++A     +ST     LE R N + E     V TAI  + E 
Sbjct: 140 DEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDD-AVHTAILALKET 198

Query: 323 IAPELTKANLEV 358
              ELT+ N+E+
Sbjct: 199 FEGELTEDNIEI 210


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 0.78
 Identities = 22/94 (23%), Positives = 40/94 (42%)
 Frame = +2

Query: 89   TSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIK 268
            TS V   VI++     +    G P +   ++  LG F +   S  S  +    ++ + + 
Sbjct: 1088 TSEVTLSVIRARPGLLVKMVDGEPILTQQVIQNLGGFSSEEVSMVSRCIRSRTQIMNMLA 1147

Query: 269  SEYHGKGVLTAIKNINELIAPELTKANLEVTPTE 370
            +E H    +   K +NE +A  L + N +   TE
Sbjct: 1148 TEIHYAASVGQNKYLNEYVA-SLIRTNEKTHSTE 1180


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 274 FTLDVISQFKSFMNTSGCTRGYSC 203
           +TLD+   F + +  SGC + Y C
Sbjct: 96  YTLDITQLFAAGVYFSGCIKDYFC 119


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 140 FDSRGNPTVEVDLVTELGLFRAAVPSGASTG 232
           F     PTV VDL     L RA  P   STG
Sbjct: 528 FSRYNQPTVSVDLRNSSILRRAQEPVNGSTG 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,599
Number of Sequences: 5004
Number of extensions: 27911
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)