Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31013
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 107 3e-24
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 102 1e-22
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 99 8e-22
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 99 8e-22
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 48 5e-06
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 31 0.58
01_01_0796 + 6190931-6192745 31 0.58
10_08_0039 - 14355746-14355772,14356713-14356772,14356873-143569... 30 1.0
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538... 28 4.1
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906... 28 4.1
06_03_0535 + 21897912-21898064,21898151-21898246,21898362-218984... 27 9.5
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 27 9.5
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 107 bits (258), Expect = 3e-24
Identities = 54/77 (70%), Positives = 65/77 (84%), Gaps = 1/77 (1%)
Frame = +2
Query: 110 VIKSIKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRDNIKSEYHGK 286
V++SI+ARQI DSRGNPTVEVDLV G L R+AVPSGASTG++EALELRD + Y GK
Sbjct: 50 VVRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGK 109
Query: 287 GVLTAIKNINELIAPEL 337
GVL A++NINE+IAP+L
Sbjct: 110 GVLNAVRNINEVIAPKL 126
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +3
Query: 366 QREIDELMLKLDGTENKSKLGANAILGVSL 455
Q ++D +ML +DGT NKSKLGANAILGVSL
Sbjct: 134 QSDVDAIMLDIDGTPNKSKLGANAILGVSL 163
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 102 bits (245), Expect = 1e-22
Identities = 53/76 (69%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Frame = +2
Query: 113 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 289
I+S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 290 VLTAIKNINELIAPEL 337
VL A+ N+N +I P L
Sbjct: 64 VLKAVDNVNSIIGPAL 79
Score = 33.5 bits (73), Expect = 0.082
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 6/37 (16%)
Frame = +3
Query: 363 QQREIDELMLK-LDGTEN-----KSKLGANAILGVSL 455
+Q ID M++ LDGT+N K KLGANAIL VSL
Sbjct: 86 EQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVSL 122
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 99 bits (238), Expect = 8e-22
Identities = 53/76 (69%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Frame = +2
Query: 113 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 289
I S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 290 VLTAIKNINELIAPEL 337
V A+ N+N +IAP L
Sbjct: 64 VSKAVDNVNSVIAPAL 79
Score = 34.7 bits (76), Expect = 0.036
Identities = 21/36 (58%), Positives = 25/36 (69%), Gaps = 6/36 (16%)
Frame = +3
Query: 366 QREIDELMLK-LDGTEN-----KSKLGANAILGVSL 455
Q E+D M++ LDGT+N K KLGANAIL VSL
Sbjct: 87 QAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVSL 122
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 99 bits (238), Expect = 8e-22
Identities = 51/80 (63%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Frame = +2
Query: 101 LKMVIKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEY 277
+ + I+S+KARQIFDSRGNPTVEVD+ G F R AVPSGASTG++EALELRD S+Y
Sbjct: 1 MAVTIQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDG-GSDY 59
Query: 278 HGKGVLTAIKNINELIAPEL 337
GKGVL A+ N+N +I P L
Sbjct: 60 LGKGVLKAVSNVNTIIGPAL 79
Score = 33.9 bits (74), Expect = 0.062
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 6/37 (16%)
Frame = +3
Query: 363 QQREIDELMLK-LDGTEN-----KSKLGANAILGVSL 455
+Q +ID M++ LDGT N K KLGANAIL VSL
Sbjct: 86 EQVDIDNFMVQQLDGTSNNWGWCKQKLGANAILAVSL 122
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 47.6 bits (108), Expect = 5e-06
Identities = 27/76 (35%), Positives = 41/76 (53%)
Frame = +2
Query: 110 VIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKG 289
VI S++ARQI D RG P VEV L T + RA+ + + A +RD K + +
Sbjct: 46 VITSVRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLARA 105
Query: 290 VLTAIKNINELIAPEL 337
V A++ IN+ ++ L
Sbjct: 106 VADAVRVINDKVSEAL 121
Score = 32.3 bits (70), Expect = 0.19
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +3
Query: 363 QQREIDELMLKLDGTENKSKLGANAILGVSL 455
QQ +ID+ ++ LD +K+++G N++L VS+
Sbjct: 128 QQSQIDQAIMDLDKAHHKAEIGVNSMLAVSI 158
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 30.7 bits (66), Expect = 0.58
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 191 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIA-PELTKANLE-VTP 364
GL +A + SGA + A+E D+ YHG V +++N +IA E +++ E V+P
Sbjct: 1124 GLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADDEASESEAEPVSP 1183
Query: 365 T 367
T
Sbjct: 1184 T 1184
>01_01_0796 + 6190931-6192745
Length = 604
Score = 30.7 bits (66), Expect = 0.58
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 191 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTP 364
GLF+ A TG A+ + D +S++H G T ++ ++ ++ +A E P
Sbjct: 29 GLFKCASDLSILTGASVAVVIEDQNRSKFHAVGTPTVQAVVDAALSSDVEEAAAEARP 86
>10_08_0039 -
14355746-14355772,14356713-14356772,14356873-14356944,
14357042-14357109,14357288-14357350,14357533-14357669,
14357950-14357987
Length = 154
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 26 PNLACKVQFC*IRITLNLRKSTSSVLKMVIKSIKARQIFDSRGNPTVEV 172
P+++C + + I L LRKST +V +++ ++ RQI + G T +
Sbjct: 79 PDISCMARRAKLTINLKLRKSTINVEQLI--HVRLRQILNFMGGKTAYI 125
>11_01_0660 +
5382460-5382764,5383854-5384348,5384454-5384541,
5384629-5384691,5384965-5385125,5385214-5385289,
5385395-5385454,5385555-5385662,5385746-5385982,
5386192-5386307,5386756-5386813
Length = 588
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 254 RDNIKSEYHGKGVL--TAIKNINELIAPELTKANLEVTPT 367
RD + + GKG + T+ ++++ L P+LT NL+V PT
Sbjct: 518 RDTFPTSFDGKGAMVQTSNRSLSPLRDPDLTMRNLQV-PT 556
>07_03_0482 +
18589573-18589728,18589889-18590065,18590518-18590688,
18590913-18591029,18591614-18591742,18592210-18592311,
18592412-18592498,18592585-18592638,18594880-18595016,
18595181-18595235,18596133-18596188,18596275-18596334,
18596442-18596529,18596634-18597371,18597451-18597511,
18598301-18598403,18599180-18599311,18599393-18599477
Length = 835
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 289 SLAMIFTLDVISQFKS-FMNTSGCTRGYSCPEQAKLC 182
SLA+ +DV+ + S + + + CT+G+ P +LC
Sbjct: 658 SLALPVAMDVVDEILSNYKSNAVCTKGHQFPRGNRLC 694
>06_03_0535 +
21897912-21898064,21898151-21898246,21898362-21898474,
21898590-21898656,21898741-21898833,21898968-21899111,
21899693-21899781,21899910-21900015,21900119-21900206,
21900304-21900422,21900913-21901247,21901824-21901933,
21902070-21902179,21902303-21902413,21902870-21903174,
21903267-21903375
Length = 715
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/58 (18%), Positives = 30/58 (51%)
Frame = +2
Query: 80 RKSTSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALEL 253
+ + + ++ ++ +K+ +F+ +G P + + E G + + SGA + V A ++
Sbjct: 143 KAAMQTFVEKIVSMMKSEGLFEWQGGPIILAQVENEYGPMESVMGSGAKSYVDWAAKM 200
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 384 VHQSLSVGVTSRLALVSSGAISSL 313
VHQSLS G TS + +SS + SS+
Sbjct: 802 VHQSLSNGFTSSSSFISSSSQSSV 825
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,289,427
Number of Sequences: 37544
Number of extensions: 168657
Number of successful extensions: 429
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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