Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31011
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...   122   8e-29
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    31   0.19 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   0.76 
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    29   0.76 
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   5.4  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    26   5.4  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   7.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.4  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   9.4  

>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score =  122 bits (293), Expect = 8e-29
 Identities = 70/177 (39%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
 Frame = +2

Query: 182 LPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDI-SYPDFSAYRRKETQDPTSKAN 358
           LP +ST  +L GS+    + +   T +       +TD    PDFS Y+ K T D +    
Sbjct: 19  LPVSSTASSLKGSM----MTIPKFTSIRT-----YTDSPEMPDFSEYQTKSTGDRS---- 65

Query: 359 ETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKS 538
                 +  +Y +                  F++S SA+ADVLA++K E+ L++IPEGK+
Sbjct: 66  ------RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKN 119

Query: 539 VTFKWRGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHFG 709
           +  KW+GKP+FIRHRT +EI    +V + TLRDPQ D  R Q P+WLV+IGVCTH G
Sbjct: 120 LVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLG 176



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 19/28 (67%), Positives = 25/28 (89%)
 Frame = +3

Query: 705 LGCVPVANAGEFGGYYCPCHGSHYEASG 788
           LGCVP+  AG++GG++CPCHGSHY+ SG
Sbjct: 175 LGCVPIGEAGDYGGWFCPCHGSHYDISG 202


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +2

Query: 92  YFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGS 220
           YF+S+T   A S +   ++PT +EK++ LPL   ST++T+  S
Sbjct: 699 YFRSNTSGSAKS-EGYYIIPT-TEKSLYLPLRNRSTIDTISHS 739


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 510 SWLKFQKESLSP--SNGEENHCLSVTGQQTKSRPRRLCLSTRSVTLSTTINVPKTPSGWS 683
           S+ K QKE  S   SN      L +  + T +   R+   TRS    +T   P  PSG S
Sbjct: 528 SFSKSQKEETSSNSSNSSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPSGHS 587

Query: 684 *SAYVPT 704
            S  +P+
Sbjct: 588 PSIAIPS 594


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +2

Query: 44  YRNKMNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTV 202
           +R   +S +  G +AP     ++ +++   PL     PS   ++LP  ++ST+
Sbjct: 399 HRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTL 451


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +2

Query: 152 TPSEKTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKE 331
           TP +++   P+P  +       SLPI  L     T +PA    A +  S  D +    K+
Sbjct: 314 TPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPA-AEPASSTTSARDQTPSTPKD 372

Query: 332 TQDPTSKANETIDERQSFTY 391
              P S A  + +E+Q  TY
Sbjct: 373 VGSP-STAETSAEEKQMETY 391


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 455 VSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPV 622
           VS     ADV +L ++ + L E+P G +   +   + +F +HR  + +  E  +P+
Sbjct: 71  VSLEKREADVASLGEV-MDLEEVPRGITRQARQLNEYIFPKHRFRNHLVDEGKIPL 125


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 604 GRD--FVCCPVTDKQWFSSPFEGDRLSFWNFSQLDFNLG*SQNISSR 470
           GRD  ++C   + K W  S  + ++ +   FS+L   LG    I  +
Sbjct: 155 GRDLAWICFRESGKHWMVSALDAEKRAIQRFSELFSGLGLEDRIEGK 201


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
 Frame = +2

Query: 26  NYLPIIYRNK-MNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVL------PL 184
           NY  ++ RN+ +N+ +  G       +S     ++  P++   T S  +         PL
Sbjct: 49  NYADLLKRNEDLNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL 108

Query: 185 PKTSTVETLHGSLPIQG 235
           P TST  T   S+P  G
Sbjct: 109 PSTSTSCTTSTSIPPTG 125


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +2

Query: 50  NKMNSVVRAGHLAPYFKSSTQVV-ANSLKPLVVVPTPS--EKTVVLPLPKTSTVETLHGS 220
           NK N+++  G  AP       V+  N+L   +   +    EK      P +ST+ T H S
Sbjct: 487 NKENTMLNDGSTAPAKNDIRNVINTNNLDAKLSDESELMIEKNKSYSTPASSTIPTFHTS 546

Query: 221 LPIQGLKV 244
            P+  L +
Sbjct: 547 QPLTSLNM 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,275,139
Number of Sequences: 5004
Number of extensions: 67736
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)