Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31011
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0023 - 19000591-19001234,19003322-19003496 116 2e-26
04_03_0792 + 19693957-19694146,19695614-19696260 115 4e-26
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 36 0.028
02_02_0459 + 10513611-10514015 31 1.0
11_06_0546 + 24853167-24853880 29 4.2
04_03_0621 - 18102243-18104249 29 4.2
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217... 29 4.2
06_01_0724 + 5299278-5299542,5299690-5299950,5300246-5300351,530... 28 7.4
05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928 28 7.4
07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584 28 9.7
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430... 28 9.7
>02_04_0023 - 19000591-19001234,19003322-19003496
Length = 272
Score = 116 bits (279), Expect = 2e-26
Identities = 53/112 (47%), Positives = 72/112 (64%)
Frame = +2
Query: 374 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 553
+++F Y + FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 108 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 167
Query: 554 RGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHFG 709
RGKP+FIR RT ++I+ +V + +LRDPQ D +R +NP+WLVVIGVCTH G
Sbjct: 168 RGKPVFIRRRTEEDINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLG 219
Score = 60.1 bits (139), Expect = 2e-09
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = +3
Query: 705 LGCVPVANAGEFGGYYCPCHGSHYEASG 788
LGC+P+ NAG+FGG++CPCHGSHY+ SG
Sbjct: 218 LGCIPLPNAGDFGGWFCPCHGSHYDISG 245
>04_03_0792 + 19693957-19694146,19695614-19696260
Length = 278
Score = 115 bits (277), Expect = 4e-26
Identities = 54/112 (48%), Positives = 71/112 (63%)
Frame = +2
Query: 374 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 553
+++F Y + FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 114 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 173
Query: 554 RGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHFG 709
RGKP+FIR RT D+I+ +V V +LR PQ D +R +NP+WLVVIGVCTH G
Sbjct: 174 RGKPVFIRRRTEDDIALANSVDVGSLRHPQQDAERVKNPEWLVVIGVCTHLG 225
Score = 60.1 bits (139), Expect = 2e-09
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = +3
Query: 705 LGCVPVANAGEFGGYYCPCHGSHYEASG 788
LGC+P+ NAG+FGG++CPCHGSHY+ SG
Sbjct: 224 LGCIPLPNAGDFGGWFCPCHGSHYDISG 251
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 36.3 bits (80), Expect = 0.028
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +3
Query: 651 INVPKTPSGWS*SAYVPTLGCVPVANAGEFGGYYCPCHGSHYEASG 788
+ KT + + +A LGCV NA E + CPCHGS Y G
Sbjct: 139 VEADKTLATYGINAVCTHLGCVVPWNAAE-NKFICPCHGSQYNNQG 183
>02_02_0459 + 10513611-10514015
Length = 134
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -2
Query: 733 PALATGTHPKVGTYADHDQPLGVLGTLIVVLRVTERVDRHS 611
P L G H KV + D LG LGTLI L T V +H+
Sbjct: 16 PPLQVGRHKKVPKFPDKTTVLGSLGTLIGKLEAT--VSKHA 54
>11_06_0546 + 24853167-24853880
Length = 237
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 590 DEISTEKAVPVDTLRDPQHDDQ 655
DEI + P+ TL+ PQH DQ
Sbjct: 169 DEIKAHRKQPILTLKQPQHQDQ 190
>04_03_0621 - 18102243-18104249
Length = 668
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 116 VANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGSL 223
+A SL+ + + PT + + P+T+TV+T H L
Sbjct: 23 IATSLEAMTITPTKEIRVRLQQSPETATVQTTHNLL 58
>02_02_0648 -
12619468-12619874,12621432-12621512,12621607-12621716,
12621896-12622164,12622440-12622567,12622637-12622699,
12623196-12623493
Length = 451
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 519 KFQKESLSPSNGEENHCLSVTGQQTKS 599
K +KES++ +N +E HC++ G Q S
Sbjct: 18 KLKKESMARANADELHCITFRGDQPGS 44
>06_01_0724 +
5299278-5299542,5299690-5299950,5300246-5300351,
5300633-5300697,5300759-5301233,5302239-5302347,
5302432-5302710,5303025-5303231,5303319-5303468,
5304164-5304277
Length = 676
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = +3
Query: 141 WSYQHPPRKRSSCPC--QKLQLWKLCMDPCRFRV*RSKQELEYLPKYVSLILTFHTRISR 314
WS H P R +C C ++ +PC R + ++Y ++ I +R
Sbjct: 240 WSVSHDPHPRWTCKCNPSRVSFSVSNKNPCTLHQARLQNLIQYFQCPMTQIGQRKKNRNR 299
Query: 315 LTVAKRLRTRLRRPMKLLMKGN 380
T K + RR ++ L++ N
Sbjct: 300 QTCTKGMDAAGRRIVRALIRAN 321
>05_01_0199 + 1434040-1434414,1434808-1435127,1435889-1435928
Length = 244
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 613 CACRHAP*PSARRSTYPKPQVVGRDRRMYPLWD 711
CAC +ARRS P V R +++P WD
Sbjct: 197 CACGCCAFRNARRSVSEYPYGVNRMHKIHPRWD 229
>07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584
Length = 496
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -1
Query: 710 SQSGYIRRSRPTTWGFGYVDRRAEGHGACR---QAQPSRSRFRLLSC 579
SQSG R GY+ + +G G CR A S +RF +L C
Sbjct: 427 SQSGSARAKHKAETLLGYLREQRQGGGGCRVEPVAASSLARFIVLRC 473
>02_05_0787 -
31742685-31742702,31742703-31742744,31742993-31743022,
31743337-31744183,31744431-31744560,31744682-31744814
Length = 399
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 74 AGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTS 196
AG L+P SS + S L +P+P T + PLP +S
Sbjct: 218 AGLLSPPAMSSAALSPMSTSSLSPLPSPMSSTALSPLPPSS 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,831,515
Number of Sequences: 37544
Number of extensions: 472237
Number of successful extensions: 1239
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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