Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31010
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    29   0.53 
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    27   2.1  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   3.7  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   3.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.7  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   6.5  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   6.5  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    25   6.5  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 260 VNYTILHKIIQNL--RQSFFRTHCVTLTENMRSVIQ 159
           V+  +   +I+NL   + F RTHCV LT N  +V++
Sbjct: 734 VDQHVSRDLIKNLFGPEGFLRTHCVVLTTNSLNVLK 769


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 430 PLDSQLLHFDXWESLDEESMRLTQTSEFWTXVQYEAERLDLVPPANLSDHLQDSDEDWRD 609
           P+DS+L   D W++  +      +  E  + +  + E  ++   +N  D+L  S E +R 
Sbjct: 231 PVDSELTELDIWKNPKKTMFLPVKPLESNSALNSQNEHTEVQKKSNSIDNLTPSSELFRK 290

Query: 610 R 612
           R
Sbjct: 291 R 291


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 309 NAHRQKVCAKCDPTAAGELHNFTQDNSKSSTK 214
           NA +Q V  K  PT   +L  F Q+N   STK
Sbjct: 324 NAIKQLVFDKLPPTICMQLKRFEQNNFAMSTK 355


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 115 SLSNTETLFGSRPVRTKAARAIRLM 41
           SLS T TL G R V   AAR ++LM
Sbjct: 7   SLSFTNTLSGKRNVLRPAARELKLM 31


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 454 FDXWESLDEESMRLTQTSEFWTXVQYEAERLDLVPPANLSDHL 582
           FD W    E+S   T TS F+  V ++      + P NL+  L
Sbjct: 240 FDAWVEYAEDSAYNTNTSLFYGVVGHQNGSNGFISPKNLTRDL 282


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 70  FEPAGSRIMFQCLTNSIGGLGRSIVFNNLR 159
           F P  + I+F   T+ I G+ + ++ NN+R
Sbjct: 371 FHPPAAMILFISCTSFISGILQLVLLNNIR 400


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 550 GRVSLLHIVLESRTLMFGSISWTLRPEIPIXRSAAVGSLAAATFC 416
           G V L  +V ESRT  +  ++W++  +  I     +  +  + FC
Sbjct: 247 GHVLLKDLVHESRTFGWTKLNWSVEGDTDISNLIDLECIRRSVFC 291


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
 Frame = +1

Query: 433 LDSQLLHFDX----W---ESLDEESMRLTQTSEFWTXVQY 531
           +D Q +HFD     W   + LD+E M+ T TS++    QY
Sbjct: 133 IDWQNIHFDDPDFDWGLLQRLDDEKMQYTSTSQYGFNNQY 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,096
Number of Sequences: 5004
Number of extensions: 48813
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)