Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31010
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568...    29   3.8  
03_02_0220 - 6531255-6532667                                           28   6.7  
12_02_0116 + 13858825-13858889,13859265-13859365,13859500-13859627     27   8.9  
07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837     27   8.9  
03_05_0788 + 27709563-27709832,27710101-27710887,27710947-277110...    27   8.9  

>06_03_0272 +
           19053455-19053587,19054665-19056627,19056827-19056887,
           19056975-19057198,19057573-19057642,19058453-19058515
          Length = 837

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 110 QTQSEVSEEVSFLIIYAV*PTAYSQ*VLRSVYGKNFVEDFELSCVKLCNSPAA 268
           +   +VS+EVS   +Y +   A +   L S+  K F +++ L+ V+LC    A
Sbjct: 771 ENSGKVSDEVSGEELYGLGKLAPTYTHLPSIISKPFTKEYSLTTVELCGENEA 823


>03_02_0220 - 6531255-6532667
          Length = 470

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -1

Query: 574 PTDSQVERGRVSLLHIVLESRTLMFGSISWTLRPEIPIXRSAAVGSLAAA 425
           P+DS    G++  L  +L S  L    + W L P  P+  S A+ SLAA+
Sbjct: 51  PSDS-FPLGKLPSLLPLLPSPLLSLRFLLWRLPPSSPLPSSYALSSLAAS 99


>12_02_0116 + 13858825-13858889,13859265-13859365,13859500-13859627
          Length = 97

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 540 ETRPRSTCESVGSSTRQRRRLEG 608
           +T P S  +S GSSTRQRR+ +G
Sbjct: 65  QTIPNSAKKSNGSSTRQRRQEKG 87


>07_03_1539 + 27567397-27568985,27569153-27569279,27569361-27569837
          Length = 730

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 517 SRTLMFGSISWTLRPEIPIXRSAAVGSLAAA 425
           SR L + S++W+  P +P+  S+ + SL A+
Sbjct: 46  SRRLQYPSVAWSRVPPLPVLPSSPLPSLRAS 76


>03_05_0788 +
           27709563-27709832,27710101-27710887,27710947-27711086,
           27712209-27712442,27712782-27712847
          Length = 498

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 25/93 (26%), Positives = 39/93 (41%)
 Frame = -3

Query: 293 KFVQNAIRPRPVNYTILHKIIQNLRQSFFRTHCVTLTENMRSVIQRKLLKTILLPRPPIE 114
           K   N I+PR   +T LH  ++N R   +   C+   +     IQ  + K +L       
Sbjct: 245 KLAANIIKPRDPQFTTLHGRLRNPRFYPYFNDCIAAIDGTHIPIQ--VSKDLL------- 295

Query: 113 FVKH*NIIREPAGSNESRACNSVDAVDTTILAG 15
            V+H  + R    +    AC   D + T +LAG
Sbjct: 296 -VQH--MCRHHITTQNVMACCDFDMIFTFVLAG 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,384,498
Number of Sequences: 37544
Number of extensions: 317836
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)