Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31010
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.4  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   7.2  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   7.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 112 LSNTETLFGSRPVRTKAARAIRLMPWTRL 26
           L+ TE +FG++     A R I  + W++L
Sbjct: 107 LTETELVFGAKLAWRNATRCIGRIQWSKL 135


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 474 GRRVHEIDPNIRVL 515
           GR++ E+ PNI+++
Sbjct: 224 GRKLKELSPNIKII 237


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 158 RKLLKTILLPRPPIEFVKH 102
           + L+ T+L PRP  E  K+
Sbjct: 24  QNLVNTVLQPRPSFELSKN 42


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 158 RKLLKTILLPRPPIEFVKH 102
           + L+ T+L PRP  E  K+
Sbjct: 26  QNLVNTVLQPRPSFELSKN 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,178
Number of Sequences: 438
Number of extensions: 2998
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)