Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31008
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 27 0.81
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 25 4.3
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 4.3
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 5.7
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 5.7
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 24 7.6
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 24 10.0
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 10.0
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5... 24 10.0
SPBC216.06c |swi1||replication fork protection complex subunit S... 24 10.0
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.5 bits (58), Expect = 0.81
Identities = 15/65 (23%), Positives = 26/65 (40%)
Frame = +3
Query: 117 RYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAVLLFGIXXXXXXXXXXKTSGLVYL 296
R+ +S F+ T D GS + + N++ + K SG++YL
Sbjct: 67 RFRRDSTFESETSDHEDFSGGSENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYL 126
Query: 297 NYSPP 311
+ PP
Sbjct: 127 SRIPP 131
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 90 SRFFQQTVRRYHG--ESHFKPPTMDELPVPKG 179
+R FQ + RY E KP ++E+P P G
Sbjct: 267 NRQFQSDIDRYRKDPEGFMKPAELNEIPKPAG 298
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.0 bits (52), Expect = 4.3
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Frame = -1
Query: 214 RRWLASWCD--CHEPLGTGNSSMVGG 143
RRWL CH +G GN S GG
Sbjct: 568 RRWLVRLRQACCHPQVGFGNKSAFGG 593
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 5.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 159 HPWWGA*SDFRHGSDALF 106
+P+W SDF H S+AL+
Sbjct: 658 YPYWHRNSDFSHISEALY 675
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 24.6 bits (51), Expect = 5.7
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1
Query: 154 WMNYQCPKAHGSRT 195
WM CPK HG T
Sbjct: 484 WMKTTCPKCHGPAT 497
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 24.2 bits (50), Expect = 7.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 99 FQQTVRRYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAV 227
F+ +R Y+G +K T+D+L V + Q HH + ++ V
Sbjct: 829 FEDYLRFYYGNKAYKIYTIDKL-VWSAAKQVHHIVSDGKYKFV 870
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 86 NLACYEHFYCSALC 45
+LACYE F ALC
Sbjct: 666 SLACYEFFLALALC 679
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -3
Query: 143 LEVTFAMVATHCLLEESRCNLACYEHFYCSALCVVSFIHFVSRSTH 6
LE+ F+ T + C C++H CS+ + + S+ TH
Sbjct: 6 LEIGFSKALTE--VAPVTCQCECWDHNLCSSQASEMDLIYQSQDTH 49
>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
Whi5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 97 SSNKQCVATMAKVTSSPPPWMNYQCP 174
SS+ +T + + PPW+NY P
Sbjct: 140 SSSSAVSSTSSSFDRTSPPWLNYVEP 165
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -3
Query: 128 AMVATHCLLEESRCNLACYEHFYCSALCVVSFIHFV 21
+++ + +E+ + YE YC C+ SF+ F+
Sbjct: 543 SLINANAAVEDRLFDFGRYESRYCDNGCIDSFVLFL 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,541,344
Number of Sequences: 5004
Number of extensions: 26836
Number of successful extensions: 81
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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