Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31002
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    30   0.19 
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.1  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   7.1  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   7.1  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   7.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    24   9.4  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    24   9.4  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 29.9 bits (64), Expect = 0.19
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -1

Query: 424 GGRAHSPPGVMWLLKPMDIYN 362
           GG  H P  VMWLL+P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 213 PTTSNSALRPFQFHQDRGASKGSARRVGFANSCPSASKGDLTTQ 82
           PT S ++  PFQFHQ        +      N CP  S+ D + Q
Sbjct: 191 PTGSVNSNMPFQFHQSSSVPSTPSEVAMGHNFCP-MSRNDPSLQ 233


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 300 PHPSNRNALLLHGRNRQGGGTYP 232
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -2

Query: 309 QRLPHPSNRNALLLHGRNRQGGGTYPRGLTRGPTTSNSALRPFQF 175
           Q L  P N      H          P  L   P+TS ++++PF F
Sbjct: 292 QSLSDPFNHTLQSFHPYESLFSAGQPPSLPISPSTSQNSVQPFPF 336


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 425  GWTSSQPTWCYVVTEAHGHL 366
            GW S   TW Y +  A G L
Sbjct: 1031 GWLSYAATWVYAIAAASGPL 1050


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 184 FPVSPGQGGKQRLSQEGGI 128
           FP  P   GK  LS+EGG+
Sbjct: 926 FPEPPLNSGKPALSKEGGL 944


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 311 YNGCPTLQTETHYCFTAEIGRA 246
           Y  CP L +   +CF+A   +A
Sbjct: 517 YPACPLLTSRVRFCFSASHNKA 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,390
Number of Sequences: 5004
Number of extensions: 31835
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)