Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31002
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207... 29 1.7
08_02_1461 - 27299891-27301870 28 4.0
01_07_0385 - 43212580-43213142,43213234-43213612 28 4.0
06_01_0898 + 6908826-6908974,6909059-6909428,6909510-6909929,691... 27 5.3
01_06_1749 - 39636951-39638102 27 5.3
01_02_0045 - 10576475-10577198,10578347-10578504 27 5.3
12_01_0525 - 4169605-4170417 27 7.0
08_01_0426 - 3757110-3758405 27 7.0
04_01_0128 + 1398190-1398480,1399245-1399505 27 9.2
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413... 27 9.2
>01_01_0254 -
2074095-2074100,2074389-2074462,2074572-2074633,
2074790-2075123,2075271-2075487,2075575-2075685,
2076304-2076840
Length = 446
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 279 RFGLKGGAAVVTILRS*NLYLTVGGAFTL*MSMGFSNHITPG 404
+ G+ G V+ R + L +GG ++MGF+ H+ G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395
>08_02_1461 - 27299891-27301870
Length = 659
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 297 HPSNRNALLLHGRNRQGGGTYPRGLTRGPTTS 202
H ++ LL GR R GGG + RGL P S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313
>01_07_0385 - 43212580-43213142,43213234-43213612
Length = 313
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 264 GRNRQGGGTYPRGLTRGPTTSNSALRPFQFHQ 169
G + GGG RG S SA PF FH+
Sbjct: 31 GNGKGGGGAAARGERAASAASASAWVPFHFHK 62
>06_01_0898 +
6908826-6908974,6909059-6909428,6909510-6909929,
6910017-6910315,6910390-6910648,6910732-6911041,
6911126-6911251,6911373-6911417,6911652-6911702,
6912041-6912153
Length = 713
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 160 PPVLVKLERPQSRVTGGRTSCESARVG 240
PP+ V RPQ+ V GG+TS + G
Sbjct: 556 PPLAVPQHRPQAPVPGGQTSSSTGLSG 582
>01_06_1749 - 39636951-39638102
Length = 383
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 319 SIVTTAAPPFKPKRITASRQK*AGRWYLPARTHK 218
S+ + AAPPF P RIT+ GR + + K
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRAFFVSVARK 198
>01_02_0045 - 10576475-10577198,10578347-10578504
Length = 293
Score = 27.5 bits (58), Expect = 5.3
Identities = 23/73 (31%), Positives = 32/73 (43%)
Frame = -2
Query: 309 QRLPHPSNRNALLLHGRNRQGGGTYPRGLTRGPTTSNSALRPFQFHQDRGASKGSARRVG 130
QR + ++L+HGR G G+ G RG SNS R + + GS R+
Sbjct: 61 QRCGEGAAAASVLVHGRGSGGAGSPTLGARRG---SNSGARAGEGAALGASGAGSGRQGA 117
Query: 129 FANSCPSASKGDL 91
S SA + DL
Sbjct: 118 DPVSGSSAGEQDL 130
>12_01_0525 - 4169605-4170417
Length = 270
Score = 27.1 bits (57), Expect = 7.0
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -2
Query: 273 LLHGRNRQGGGTYPRGLTR----GPTTSNSALRPFQFHQDRGASKGSARRVGFANSCPSA 106
+L G NR GGG Y G R G T SN+ F + G G RV +S P+A
Sbjct: 35 ILVGENRNGGGGYGGGDRRAGREGRTRSNTLAIAASFAKLEGGGGGDGVRVS-NHSKPNA 93
>08_01_0426 - 3757110-3758405
Length = 431
Score = 27.1 bits (57), Expect = 7.0
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Frame = -3
Query: 419 TSSQPTWCYVVTEAHGHLQRK--C-ATHREI*VLRSQYSYNGCPTLQTETHYCFTAE--- 258
T++QP W +AHG C AT + + V +G P + + T +
Sbjct: 56 TTAQPPWLLYACDAHGPAAAALYCPATGKSLRVPLPAALLDGRPVIGASQGWLVTVDEAP 115
Query: 257 -IGRAVVPTRADSQEVLPPVTRL*GLSSFTRTGGQAK 150
+ +V + LPP+T L + FT G+ +
Sbjct: 116 NLHLVLVNPITGATAALPPITTLHNVERFTSKKGKTR 152
>04_01_0128 + 1398190-1398480,1399245-1399505
Length = 183
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 291 SNRNALLLHGRNRQGGGTYPRGLTRGPTTSNSALRP 184
+ NA HGR PR ++ PTT+N + P
Sbjct: 57 NGNNAEDHHGRQAAAAAVVPRAVSTRPTTTNPSSSP 92
>03_01_0555 +
4132630-4132923,4133514-4133771,4134125-4134249,
4134789-4134990,4135172-4135297,4135404-4135660,
4135968-4136075,4136142-4136310,4136378-4136543,
4136967-4136998,4137256-4137579,4137683-4137757,
4138093-4138162,4138228-4138385,4138872-4139021
Length = 837
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Frame = -1
Query: 238 LPARTHKRSYHQ*L-----GSEAFPVSPGQGGKQR 149
+P H+R Y + G EAF V P +GG+QR
Sbjct: 31 IPPSLHQRLYRKLADEVFDGGEAFSVEPCEGGRQR 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,218,378
Number of Sequences: 37544
Number of extensions: 293246
Number of successful extensions: 716
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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