Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31002
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.50 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   3.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 334 YISRWVAHLRCRCPWASVT 390
           ++  W  H +CR P ASVT
Sbjct: 426 FVEFWEHHFQCRYPNASVT 444


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 83  KSSCFANESTTESE-SRPAEKIRRET 9
           KSS   NES TES  S    K+RR++
Sbjct: 219 KSSTIENESETESNASSTKTKMRRKS 244


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 246 GGTYPRGLTRGPTTSNSALRPFQFHQD 166
           GG+ P  +T  PTT    LR  Q  ++
Sbjct: 153 GGSLPTPVTPTPTTVQQLLRRAQIRRN 179


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 176 NWKGLRAELLVVGPLVSPR 232
           NW+GLRA  L   P + PR
Sbjct: 630 NWEGLRARTL--EPPIMPR 646


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 447 FFFFLLRWVDELTAHLV 397
           FF FLL W    T  L+
Sbjct: 288 FFLFLLAWTPYATVALI 304


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 179 WKGLRAELLVVGPLV 223
           WKG+ +E ++  PLV
Sbjct: 678 WKGMLSEKILAEPLV 692


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 447 FFFFLLRWVDELTAHLV 397
           FF FLL W    T  L+
Sbjct: 288 FFLFLLAWTPYATVALI 304


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 291  SNRNALLLHGRNRQGGGTYPRGLTRGPTTSNSALRPFQ 178
            S  +++LLH ++   GG    G T    T++  L   Q
Sbjct: 1415 STSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQ 1452


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 291  SNRNALLLHGRNRQGGGTYPRGLTRGPTTSNSALRPFQ 178
            S  +++LLH ++   GG    G T    T++  L   Q
Sbjct: 1411 STSSSILLHWKSGHNGGASLTGYTLHYRTAHGNLDELQ 1448


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 213 PTTSNSALRPFQFHQ 169
           PTT +   R F FHQ
Sbjct: 497 PTTESEERRFFSFHQ 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,518
Number of Sequences: 438
Number of extensions: 2546
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)