Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31001
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.3  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 292 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 200
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 292 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 200
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 389 PPDVKWLLEPIDIYNVDAPPTLRYK 315
           PPD  W  + +   N D    +RYK
Sbjct: 104 PPDKVWKPDIVLFNNADGNYEVRYK 128


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -2

Query: 321 IQVLKSQYSYNGYPTLQTETHY 256
           I  L + Y+YN Y       HY
Sbjct: 315 ISSLSNNYNYNNYNNNYKPLHY 336


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 160 GFIFITRCYSFTVEINREHLLS 95
           GF+  + C S T   ++EH+L+
Sbjct: 627 GFLNNSMCTSTTTSPDKEHVLA 648


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 305 DFRTCISRWVARL 343
           DF+  I RWVA +
Sbjct: 328 DFKQLIDRWVANV 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,148
Number of Sequences: 438
Number of extensions: 3283
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)