Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30997
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0411 - 18730224-18730574                                         33   0.31 
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979...    31   1.2  
02_03_0018 - 13978247-13978717                                         29   3.8  
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    28   6.6  
09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851...    28   8.7  

>12_02_0411 - 18730224-18730574
          Length = 116

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 434 ATLPLAGLDCPPGCGTPGCANT 369
           AT+PL    CPP CGTP   +T
Sbjct: 8   ATVPLLASACPPACGTPALGST 29


>08_02_1547 +
           27795664-27795674,27795743-27795892,27796182-27797906,
           27799447-27799546,27799657-27800268,27800399-27800521,
           27800905-27801039,27801108-27801209,27801716-27801778,
           27801854-27802045,27802121-27802258,27802632-27802694,
           27803068-27803466
          Length = 1270

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 56  PVMYLFWSEVNGNSWLKVLTNHGI 127
           P +  +W+E+  NSWLK  + HGI
Sbjct: 881 PPLMSYWNEMKVNSWLKYDSKHGI 904


>02_03_0018 - 13978247-13978717
          Length = 156

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = -3

Query: 631 GTGCHG-DSCSEPSEPCLQIWEPWKVLRVAAAEAPERGGSDCAQLSCSRDEENSAHLGGV 455
           GT  HG  +CS P+   L  WE   +L     E   +   +CA++     E++   L GV
Sbjct: 6   GTAVHGLPACSTPA---LTWWEATVILCGGVTEITRQ--EECARIGGHAGEQSGDRLRGV 60

Query: 454 LQRGSQWLRCLWRD 413
              G  W R   R+
Sbjct: 61  DGGGGVWGRARGRE 74


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 438 CEPRCRTPPRCAEFSSSREQLSWA 509
           C PR   PPRC  + +S   L W+
Sbjct: 351 CSPRKHEPPRCLNYLTSPHVLIWS 374


>09_04_0701 +
           19583386-19583554,19584290-19584441,19585123-19585181,
           19585319-19585344,19585407-19585758,19586184-19586667
          Length = 413

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 628 TGCHGDSCSEPSEPCLQIWEPWKVL 554
           T   G+S SEP+ PC  ++E W VL
Sbjct: 123 TSVFGESESEPN-PCFPVYEKWTVL 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,084,644
Number of Sequences: 37544
Number of extensions: 461736
Number of successful extensions: 1125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)