Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30996
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    29   1.00 
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    27   3.0  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    27   4.0  
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi...    26   7.0  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  CRSAAKPIVNEDA*LGNVSSLEGRIFVLYDNVR 111
           C S  KP++N +    NVS  + R F  YD V+
Sbjct: 177 CASDNKPLINNNLSSSNVSENQSRSFGSYDEVK 209


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 441 DFVMFTGLSSFFISLSY 391
           DFVM TG+ S F+SL Y
Sbjct: 71  DFVMGTGICSLFLSLKY 87


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 339 ATLI*QILTDTFHTQRSCSLSLPSM 265
           AT I   L DT+H Q  CSL+ PS+
Sbjct: 419 ATPIVNDLADTYHVQVYCSLNNPSV 443


>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 55  LGNVSSLEGRIFVLYDNVREA 117
           LGN     G  FV+Y+NV++A
Sbjct: 43  LGNTVQTRGTAFVVYENVQDA 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,262
Number of Sequences: 5004
Number of extensions: 66776
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)