Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30996
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615...    28   7.3  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   9.7  

>06_02_0369 -
           15260013-15260273,15260367-15260516,15261518-15261577,
           15262114-15262241,15262559-15262654,15262655-15263039
          Length = 359

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 290 RAPYLCRPWYCHYNPV*NSRDLGEIFTGVLLQVNVFNDQVVMN 162
           RAP LC  +Y  Y P  +   +G IF  VL+   +F  + V++
Sbjct: 212 RAPELCGSFYSKYTPAIDIWSIGCIFAEVLIGKPLFPGKNVVH 254


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -2

Query: 252 QSCIKLPRFRRNI--YRCTLASKRFQ*PGGNECQSKLIARIHYCRDYC 115
           Q  + +P F  ++   R  L SKR Q P  N C + L    HYC   C
Sbjct: 497 QEVVLVPCFGHHLGQERAILCSKRRQFPCQNLCGNPLNCGNHYCTKAC 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,024,405
Number of Sequences: 37544
Number of extensions: 393389
Number of successful extensions: 708
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)